Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00130 ATGGAAGTCAAGCCCATGCTTCTGCAATTTTTTCTCCTTCTCTTACTACCTTTGCTCACGGTTCATGTACTCGCTTCAAATGCGACGCTTAACGAGACTTGTGGTTACTTCAATCGTACTCTCAATAGACACGCTCAAGCACCATGCCCGAATGGTTGGGTTATCGACCCTAATAAGACCAAGTGCTTTCTCCACCTTGGGAGGCCTCAATCTTGGAATGACTCAGAAACCTGTTGTAGTAAATACGGTGGACATTTAGCATCATTGAAATCGCTTCAGGAACTACACTTTGCTCAAAGCCTATGCGGTGAATCTATAAATAGTTGCTGGATTGGTGGAAGAGTCAACTCTACAGCTGGTTTTCAGTGGATCTGGTCTGACAATTCTCAATGGAATAATTCCATATTTCGTTTGGCTGATGTTCCAGCCAATTGTACTGGAAATGGACTATCCTGTCACAGGAACAATACAGACAATTTATGTACAGTAATGACTAATAACTCAAAATCTCTCATTGGTGAGAGATGTGACAATCCTCATGCTTCTCTGTGTATACTTGACATAGATATGAAATGTAACCATATGCACTGCCACAGGGAATACCTTATCATCCTTGCAGTGGTGAGTGCATTGATACTCTCAACAACATTAGCGGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGGCGGTCTAGAAAACCATGTGATCCAGCAGCTTCACTTCCCTCGTGGAAAGTCTTTACCAAAGAGGAATTAAGATCTGTTACAAAGAATTTCAGTGAAGGTAACCGCCTCATTGGGGATGCCAAGACTGGTGGTACATACAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAAAGATCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTCGCTGTGATGGGATGCTGCTATGATCACGGTGACCGATACATTGTTTATGAGTTTGTTGCTAATGGACCCTTAGATAAATGGCTATATCACATACCAAGGGGAGGTCGCAGTTTAGATTGGACTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTTGTGCATCGGGATATACGTGCCAGTAACGTACTGCTGGATGAGGAGTTTGGAGCGCACCTTATTGGGGTTGGACTGTCCAAGTTTGTGCCATATGAAGTGATGCACGAGAGAACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACAGAAACGAGCTTACAACAAAGAGTGATGTTTATAGTTTTGGGGTCCTACTACTTGAAATAGTGAGTGGACGTAGACCTGCACAGGCAGTTGATTCTGTGGGATGGCAGAGTGTATTTGAATGGGCCACACCTCTTGTTCAAGCTCATCGCTACCCTGAACTCTTGGATCCTCATATATCTTCCTCATCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAGAAGGTGGTTGACCTTGTTTATTCATGCACGCAGCATGTCCCTTCTATGCGTCCTAGAATGTCACATGTTGTTCATCAGCTGCAACAGATTGCCCAACCACCTGCAAAGTAA 1653 0.4386 MEVKPMLLQFFLLLLLPLLTVHVLASNATLNETCGYFNRTLNRHAQAPCPNGWVIDPNKTKCFLHLGRPQSWNDSETCCSKYGGHLASLKSLQELHFAQSLCGESINSCWIGGRVNSTAGFQWIWSDNSQWNNSIFRLADVPANCTGNGLSCHRNNTDNLCTVMTNNSKSLIGERCDNPHASLCILDIDMKCNHMHCHREYLIILAVVSALILSTTLAVVVWLLVYKRGKKRRRSRKPCDPAASLPSWKVFTKEELRSVTKNFSEGNRLIGDAKTGGTYSGVQPDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLYHIPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLIGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSVFEWATPLVQAHRYPELLDPHISSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00130 550 SUPERFAMILY C-type lectin-like 25 185 IPR016187 -
Sebi13g00130 550 Gene3D - 36 187 IPR016186 -
Sebi13g00130 550 ProSiteProfiles Protein kinase domain profile. 264 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00130 550 ProSiteProfiles C-type lectin domain profile. 58 185 IPR001304 -
Sebi13g00130 550 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 144 545 - -
Sebi13g00130 550 SMART CLECT_2 49 185 IPR001304 -
Sebi13g00130 550 CDD CLECT 61 184 - -
Sebi13g00130 550 ProSitePatterns Tyrosine protein kinases specific active-site signature. 386 398 IPR008266 GO:0004672|GO:0006468
Sebi13g00130 550 Gene3D Phosphorylase Kinase; domain 1 240 339 - -
Sebi13g00130 550 Gene3D Transferase(Phosphotransferase) domain 1 340 549 - -
Sebi13g00130 550 SMART tyrkin_6 263 541 IPR020635 GO:0004713|GO:0006468
Sebi13g00130 550 FunFam C-type lectin receptor-like tyrosine-protein kinase 241 339 - -
Sebi13g00130 550 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 340 550 - -
Sebi13g00130 550 SUPERFAMILY Protein kinase-like (PK-like) 238 542 IPR011009 -
Sebi13g00130 550 Pfam Lectin C-type domain 69 184 IPR001304 -
Sebi13g00130 550 Pfam Protein tyrosine and serine/threonine kinase 283 541 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00130 Sebi-Chr13 1499136 1504728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00130 79 547 Receptor kinase-like Gene Family AT1G52310 70.981 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Sebi13g00130 PK_Tyr_Ser-Thr 6.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00130 - - gmx:100779497 948.347