Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00128 ATGGCACCAACAGCAGTGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGTCTCCACCCCTCCTTATGTGACCAACTTCGTGAAAGGCTGGGTTTTGAAGTTCCAACATTGGTGCAAGCTCAAGCAATTCCTGTTATTCTCTCCGGGCGTCATGCGTATCCTTTTTATCTCGCTTGATTATGTTCCCTTCTTTGTTTTACTGGTTAATGCTTCCACGGGCACGGGGAAGACAATTGCCTACCTAGCTCCAATTATTCATCACTTGCAGAATTATGAAAATCGAATCCAGCGCTCTGATGGGACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTATATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTCATAGCGACTCCTGGGCGCCTTTTGGATCACTTGAAGAATACATCATCATTCTTGTACACAAATTTGCGCTGGATAATTTTTGACGAAGCTGATATGATTTTGGAATTAGGATTTGGAAAAGATATACAGGGAATACTAGATCTTTTAGGTTCAAGAAAAACAGGTCATGATGATCAAGAGAATGCAGTTCCAAGACCCTCCAAAATTCAAAGACAGAATTTGCTTTTGTCAGCCACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGACAATTGGTCTCGATGATAAAAAAATAGAACCAATTTCAACAATTAAAAGCCTTGATCATTCAGAATCTGATGAAGACAATGAAGACAAGTATTCCAGTAAAATACCAACAGTTGGAGATTATAAAGTCCCCGTACAGTTGATTCAGAGATACTTGAAAGCGCCATGTGGTTCACGGCTGCCAGTACTTCTTTCAATTCTTAAGCATCTTTTTGAAAGGGAACCTTCACAAAAGGTTGTGGTATTCTTTTCAACATGTGACGCAGTAGATTTTCACTATTCACTATTAAGTGAATTCCAATTTTCATCCTATCCACAAACAGAAGGAGGGATCAAACAGATGTTTCTTGGGTGCAAAACTTTTCGATTACATGGTAATATGGAACAGGAAGATCGGCTAAAAGCTTTTCAGGCCTTTAAAACAGAGAAATCTGCTCTGCTTTTGTCCACTGATGTTTCTGCTCGAGGTCTGGATTTTCCGAAGGTTAGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAAAGGAGAATCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCATTAACAGAGTATCCTCTCCTCAAAGTCTTGGATAATTTTCCTCTGCATGGACAACAGAAACACTTAAAGAAATCTGTTTTCATAGATTCACATCCCTGGGTCCTCTCTCTCCAGAAGGCACTTGAATCCTTCATCATTTCCAAGGTGACCCTCATTGCTGATCTTATTGAATTTTACATTTGTTCTGATTATCTGTGTCTTTACTGTCTTATCTAA 1611 0.3973 MAPTAVFLLLAPSLALVSTPPYVTNFVKGWVLKFQHWCKLKQFLLFSPGVMRILFISLDYVPFFVLLVNASTGTGKTIAYLAPIIHHLQNYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNLRWIIFDEADMILELGFGKDIQGILDLLGSRKTGHDDQENAVPRPSKIQRQNLLLSATLNEKVNHLAKISLDNPVTIGLDDKKIEPISTIKSLDHSESDEDNEDKYSSKIPTVGDYKVPVQLIQRYLKAPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGGIKQMFLGCKTFRLHGNMEQEDRLKAFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLDNFPLHGQQKHLKKSVFIDSHPWVLSLQKALESFIISKVTLIADLIEFYICSDYLCLYCLI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00128 536 Gene3D - 64 255 IPR027417 -
Sebi13g00128 536 SMART ultradead3 42 266 IPR014001 -
Sebi13g00128 536 CDD DEADc_DDX31 67 254 - -
Sebi13g00128 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Sebi13g00128 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 486 IPR001650 -
Sebi13g00128 536 PANTHER RNA HELICASE 66 472 - -
Sebi13g00128 536 CDD SF2_C_DEAD 298 448 - -
Sebi13g00128 536 Gene3D - 309 522 IPR027417 -
Sebi13g00128 536 Pfam Helicase conserved C-terminal domain 316 439 IPR001650 -
Sebi13g00128 536 SMART helicmild6 356 439 IPR001650 -
Sebi13g00128 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 460 IPR027417 -
Sebi13g00128 536 Pfam DEAD/DEAH box helicase 66 241 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00128 Sebi-Chr13 1491323 1495096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00128 66 448 Eukaryotic Initiation Factors Gene Family AT5G11170 26.087 2.58e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00128 K14806 - gmx:100805157 796.193