Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00127 ATGAAGGCTCCTTCCAATGGTTACTTGCCTAATTCTGGCGAAGCATTCTTAGATAGAATAAATGATATCATGATGAAGGGAAGTGGGTATTCATTTGACTTTGGAGTTGCTGATCTTTTGGTTAATTTTCTTGTGTTATTTTGCCGGCCCTCTTCTCCATGGTATTTTCCCCCTGAACTGGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCGTTGGTTTCATTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCGAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATTCTTCACAATGTTGCCCTGCATGTAGCTGGAAGTAATATTGCTGCAAGAATATTATTTCCTCAAGCATTTGATATGATGGCTGATCCTGAAACTGATGAGGTTTATGCACAGATGACCCTTCAGCCAGTAAATAAATATGACAAGGAAGCAATGATGGCATCAGACATGAGTCTCAAACAAAGCCAACAACCTACCGAATTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAAATATTCCCCCCTCTGGATTTTTCCATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACACCACATGGACATTTAGGCATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTATTTGCTGGAGATTCAGTTCTTTTCATCAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCGTTCACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCAATTGCCAAGTATAATAAATCCTTGTTCACTCAAGTATCACTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGTGTACGCAGATATATGGGTACAATCACTGGGATCAATGACTTGGATCCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACTGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAGCCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCCATGCCTTGGCTTGGAGATGACCTTGGAATGAAGGATGCCTCAAATTCAATCTTTCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCACAATCAGGGTTTCTGCCTCCATCCATGCTTTCATCTAATACACTGCATGTTGCTTCTAGCCAGATTCCAAATCAGTGTGTACAGCAACCGGTATCCTATTCTCAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCTCACCCCAACAAAGTTTCCAATCGGCTGGTAAGAATACAATGCTAATGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTACTCTCTTACAGAGGCAGCAGCAGCAACAGACACAGTTGCAACAATCTCCATTGCAGTTATTGCAACAAAGCCTGTCACAAAGGGCATCACAGCAACCACAAATGACTCAAATGTCACCGCAAAACAGCTCAGAGCAGCAACCACAGTTACAGTTGTTACAGAAATTGCAACAGCAGCAGCAGCAACTCCTGTCCACATCTAGCTCAAATTTGCAGTCTCAGCTTCTGCAGCAACAAAATTCTCACCAACAAAACCAGCAACTGCCGCAGCTGCCTCTATCTCAGCATCAGCCTCAACAGCTTGGCAACAATGCATTCTCAATGGACAGGCTTCTCAACAACAACTTCTCTTCTTCAGCTCTGATGCAATCACAGCAGCTTCCTGTAAGCCAACCGCAGCATACACAGAAATCACCAACTTATACTAGAGCTCCCTCTACTCTTACAGATGCAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGATGTCTCCTCCAAACCTCCTGAAAAGAAATCAACAAGTAACAGTCACATTAGGGGGGACTTCGGTAGTTGAACCAACCAATAATCTAATACAGGAGCTTCAGACTAAGTCTGACATGCATATCAAACATGAATTAGCCAGTGTAAAAGGACCTGACAAGCTAAAGTATAAAGGGACAATTACTGATCAGCTGGAAGTTTCTTCTGGAACACCTTACTGTATTGATCCTGGTAATATCCACCAGAACTTCCCACTTCCCAGCTTCTGCATGGATGCGGATGTCCAATCACATGCAAGAAATAATCTACCATTTGCCTCTAATCTCGATGGATTAACACCTGATACTTTGCTCTCAAGGGGGTATGACTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGTGGTGGTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTCCACAGTCATTTGGTGTGCCAAACATGCCTTTTAAACCAGGATGCTCAAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGATACAAGGGATATGATGAACTTCGGCATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAACAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAATCCCCAATCAAGCTTGTAGTGGGACAGAAAATGGCAATGCATGGAGAGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGATAA 3180 0.4289 MKAPSNGYLPNSGEAFLDRINDIMMKGSGYSFDFGVADLLVNFLVLFCRPSSPWYFPPELGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICILHNVALHVAGSNIAARILFPQAFDMMADPETDEVYAQMTLQPVNKYDKEAMMASDMSLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPIAKYNKSLFTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASNSIFPGLSLVQWMSMQQNNQFSAAQSGFLPPSMLSSNTLHVASSQIPNQCVQQPVSYSQLQQQQLLSGSISPQQSFQSAGKNTMLMTSLPQDSQFQQQIDQQATLLQRQQQQQTQLQQSPLQLLQQSLSQRASQQPQMTQMSPQNSSEQQPQLQLLQKLQQQQQQLLSTSSSNLQSQLLQQQNSHQQNQQLPQLPLSQHQPQQLGNNAFSMDRLLNNNFSSSALMQSQQLPVSQPQHTQKSPTYTRAPSTLTDADAPSCSTSPSTNNCQMSPPNLLKRNQQVTVTLGGTSVVEPTNNLIQELQTKSDMHIKHELASVKGPDKLKYKGTITDQLEVSSGTPYCIDPGNIHQNFPLPSFCMDADVQSHARNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGGPRDIETELSTAAISPQSFGVPNMPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPIPNQACSGTENGNAWRGQYDDNSAASFNR 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00127 1059 SUPERFAMILY DNA-binding pseudobarrel domain 180 320 IPR015300 -
Sebi13g00127 1059 Gene3D - 354 425 - -
Sebi13g00127 1059 CDD B3_DNA 190 282 IPR003340 GO:0003677
Sebi13g00127 1059 FunFam Auxin response factor 189 293 - -
Sebi13g00127 1059 ProSiteProfiles B3 DNA-binding domain profile. 191 293 IPR003340 GO:0003677
Sebi13g00127 1059 MobiDBLite consensus disorder prediction 1039 1059 - -
Sebi13g00127 1059 SMART B3_2 191 293 IPR003340 GO:0003677
Sebi13g00127 1059 Pfam Auxin response factor 317 399 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi13g00127 1059 SUPERFAMILY CAD & PB1 domains 946 1010 - -
Sebi13g00127 1059 ProSiteProfiles PB1 domain profile. 932 1025 IPR000270 GO:0005515
Sebi13g00127 1059 Gene3D - 188 292 IPR015300 -
Sebi13g00127 1059 Pfam AUX/IAA family 929 1018 IPR033389 -
Sebi13g00127 1059 FunFam Auxin response factor 927 1021 - -
Sebi13g00127 1059 MobiDBLite consensus disorder prediction 598 627 - -
Sebi13g00127 1059 MobiDBLite consensus disorder prediction 697 746 - -
Sebi13g00127 1059 Gene3D - 927 1021 - -
Sebi13g00127 1059 Pfam B3 DNA binding domain 191 292 IPR003340 GO:0003677
Sebi13g00127 1059 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 62 646 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi13g00127 1059 FunFam Auxin response factor 354 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00127 Sebi-Chr13 1463465 1469635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00127 1 523 B3 DNA Binding Superfamily AT1G19220 72.467 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi13g00127 AUX_IAA 3.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00127 K14486 - gmx:100804628 829.32