Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00125 ATGGTGAAGCAGTGTGTGGAAAAACCTGCGGAAGAGCGAAGTGATTCCTTGTACCGTGGAGTACGGAAGAGGAAGTGGGGAAAATTTGTCTCTGAAATCAGATTACCCAACAGCCGCCAGAGGATATGGTTAGGTTCCTACGACACCGCCGAAAAGGCAGCGCGTGCCTTCGATGCTGCCATGTTCTGCTTACACCGCTGCTGCCCGTTTTGCCCATACGGAGCCCCGAAAGGATTACCCGGGTCAACCCGTTACAATTCCGCAGGAATCTTTCTCTTCGTCAGAGGGGACGATTTCACTGCCTATGGAGTCGCCGTCTCCCCTCTCTCTGAGGTTACGGTTCAGACAGATTATGACGTCACGCCAAGCGAGTCGCTTTCGGATCTGTTTTCGGTTATTGGGTCGGGTAATTTTGAACCCGATTACTCTGTTTTTCCGAGTTTCGATGATTTTGGCAGCGATTTCTACGTGCCGGAGCTGCCAAGCTTTGATTATGGAGCAGAGAACATGGATGGGTTGATAATTGAGGACTCGTTCTTGTGGAATTTCTAA 552 0.5036 MVKQCVEKPAEERSDSLYRGVRKRKWGKFVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLHRCCPFCPYGAPKGLPGSTRYNSAGIFLFVRGDDFTAYGVAVSPLSEVTVQTDYDVTPSESLSDLFSVIGSGNFEPDYSVFPSFDDFGSDFYVPELPSFDYGAENMDGLIIEDSFLWNF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00125 183 Gene3D AP2/ERF domain 17 68 IPR036955 GO:0003700|GO:0006355
Sebi13g00125 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 65 - -
Sebi13g00125 183 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Sebi13g00125 183 CDD AP2 16 65 IPR001471 GO:0003700|GO:0006355
Sebi13g00125 183 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Sebi13g00125 183 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Sebi13g00125 183 SUPERFAMILY DNA-binding domain 16 68 IPR016177 GO:0003677
Sebi13g00125 183 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Sebi13g00125 183 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00125 Sebi-Chr13 1425540 1426174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00125 16 183 AP2-EREBP Transcription Factor Family AT1G19210 44.444 6.45e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi13g00125 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00125 - - gmx:100813688 189.889