Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00123 ATGTCAGGCATTGTTTCTGACCCCAAAAACGTTCTAGAGAGTTGGAAGTCACCTGGTGTTCATGTTTGCAATTGGTATGGTGTCAGATGCAATAACACAATTGATAGGATCATAGAGCTTGATCTTAATGGAAGCTTACTTGGGGGCACCATTTCCCCTGCTCTTGCCAACCTCTCTTTTTTGGAAATTCTTGATCTTTCTCAGAATTTCTTTGTGGGTCACATTCCAAAAGAACTGGGCTATTTAATTCACCTTAGACAACTCAGTTTATCTTGGAATTTTCTTGAAGGGAAAATTCCCTCTGAGTTGGGGTCACTTCATAATTTGTACTACCTTAACATGGGAAGTAATCAACTGGAAGGTGATATTCCACCATCACTTTTCTGCAATGGGTCTTCCTCATTGAGGTATATAGACCTCTCTAACAATTCCTTGGGGGGACAAATACCCTTGAACAATGAGTGTATCCTCAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCCTTAGCTCTTTCAAACTCCACACAACTTAAATGGCTTGATTTAGAGTCAAATATGTTGAGTGGGGTGCTACCATCTGAGGCTGTAAGTAATTGGCCACAATTACAATTCCTTTACCTATCAAATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTTCTTCCTTGATGAATTTGTCTAACATTCAAGTACTTGAGTTGGCGGGAAACAATCTTGGAGGGAAGCTACCTCATACCATTGGTGATCTTCCTACCAGCTTGTTGCAGCTTCACCTAGATGACAACCTCATATATGGTTCTATACCTCCAAACATTGGCAACCTTTTCAATCTGACTCTCCTAAACTTTTCTAGTAACTTACTAAATGGATCAATACCTCCAAGCCTCTGCCAGATGAGTAGGCTAGAGAGGATTTATTTGTCAAATAATTCACTATCTGGGGAGATTCCTTCAACCCTTGGTGGCATTAAGCATCTGGGACTTCTTGACTTGTCAAGAAACAAGCTTTCTGGTTTAATACCAGACAGTTTTGCTAACCTCTCCCAATTAAGAAAGCTTTTACTTTATGACAACCAGCTTTCTGGAACCATCCCTCCAAGTCTTGGAAAATGTGTCAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGGATGATCCCTAAACAAGTTGCAGCCTTGGCTAGCCTCAAACTGTACTTGAATTTATCAAGCAATAACTTATATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGATCTATCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCTCTAGAGTACCTTAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTCCCAGATTCATTAGGCCAATTGCCTTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACTGGGGTAATACCACAGTCCCTTCAGTTGTCCTCCACACTCAACAAACTTAATTTCTCTTACAATAAATTCTCAGGGAGTGTCTCAAGCAAGGGGAGTTTTTCCTCTTTGACCATAGATTCTTTCCTAGGGAATGATGGTCTCTGTGGCTCAGTAAAAGGCATGCAAAGCTGCCACAAGAAACACAGATATCATTTGGTTCTCTTGTTAATTCCAATGCTACTATTTGCCACACCCCTGCTGTGCATGTTTGGGTACCCCACAAAAATTAAGTCAAAATTCAAAAAACAATTGGCAATAGTTAGCAGAAGGGAAGTGGAGGATGAAGATGAGGAAACACAAGAGCTCAAGTACCCAAGAATTTCATATAGAAAACTCATTGTAGCCACTGGAGGATTCAGTGCTTCAAGCCTAATTGGTTCAGGTCGGTTTGGACAGGTCTACAAAGGAGTTCTCCAAGATAATACAAGAATAGCTGTGAAGGTATTAAACACAACAACAGCTGGAGAGATTTCAGGAAGCTTTAAAAGGGAATGCCAAATCCTGAAAAGGACTAGGCACAGAAATTTAATAAGGATAATCACAATTTGCAGCAAAAAAGAGTTCAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGGCACTTATATCCAAGCCATGGGTTAAGCCAGAGGCTGCATATGGTTCAGTTAGTGAGGATCTGCAGTGATGTGGCTGAGGGAATGGCTTATCTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTATCAAAGGTGATGAGAACATACCCTCTAGTGACTCAACAACATCTTTCAGCTCAACACATGGTCTATTATGTGGCTCTCTTGGCTACATAGCCCCTGAGTATGGAATGGGAAAACATGCTTCAACTCAGGGTGATGTTTACAGTTTTGGAGTACTTGTTCTAGAAATAGTGACGGGTAGACGCCCAACAGATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGAGACAATATCCACACAAGCTTGATAACATTGTTGAACAAGCATTGCAAAGGTGCTTTCCTTCTGCCATGTCAAGTCACTACCACAAAATTGGGCAAGATGTTATATTGGAACTCATTGAGTTGGGGCTTCTGTGCACACACCAGAACCCTTCAACAAGACCAAGCATGCTGGATGTGGCCCAAGAAATAGGGAGGTTGAAGGACTACCTCTCTAATAAATCTTCTCTGATTCAAGAAGTCAATGCTATGGTTAATTCTTTCCCCAGTGAAGATAAATTTAGTTGGAAAATAAATAATTAA 2865 0.4087 MSGIVSDPKNVLESWKSPGVHVCNWYGVRCNNTIDRIIELDLNGSLLGGTISPALANLSFLEILDLSQNFFVGHIPKELGYLIHLRQLSLSWNFLEGKIPSELGSLHNLYYLNMGSNQLEGDIPPSLFCNGSSSLRYIDLSNNSLGGQIPLNNECILKELRFLLLWSNKLVGQVPLALSNSTQLKWLDLESNMLSGVLPSEAVSNWPQLQFLYLSNNDFVSHDGNTNLEPFFSSLMNLSNIQVLELAGNNLGGKLPHTIGDLPTSLLQLHLDDNLIYGSIPPNIGNLFNLTLLNFSSNLLNGSIPPSLCQMSRLERIYLSNNSLSGEIPSTLGGIKHLGLLDLSRNKLSGLIPDSFANLSQLRKLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGMIPKQVAALASLKLYLNLSSNNLYGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGQLPYIQALDVSSNQLTGVIPQSLQLSSTLNKLNFSYNKFSGSVSSKGSFSSLTIDSFLGNDGLCGSVKGMQSCHKKHRYHLVLLLIPMLLFATPLLCMFGYPTKIKSKFKKQLAIVSRREVEDEDEETQELKYPRISYRKLIVATGGFSASSLIGSGRFGQVYKGVLQDNTRIAVKVLNTTTAGEISGSFKRECQILKRTRHRNLIRIITICSKKEFKALVLPLMPNGSLERHLYPSHGLSQRLHMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLIKGDENIPSSDSTTSFSSTHGLLCGSLGYIAPEYGMGKHASTQGDVYSFGVLVLEIVTGRRPTDVLIHEGSSLHEWVKRQYPHKLDNIVEQALQRCFPSAMSSHYHKIGQDVILELIELGLLCTHQNPSTRPSMLDVAQEIGRLKDYLSNKSSLIQEVNAMVNSFPSEDKFSWKINN 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00123 954 FunFam Leucine-rich repeat family protein 1 154 - -
Sebi13g00123 954 CDD STKc_IRAK 632 921 - -
Sebi13g00123 954 ProSiteProfiles Leucine-rich repeat profile. 385 406 IPR001611 GO:0005515
Sebi13g00123 954 PANTHER RECEPTOR-LIKE PROTEIN 55 273 919 - -
Sebi13g00123 954 ProSiteProfiles Protein kinase domain profile. 626 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00123 954 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 329 555 - -
Sebi13g00123 954 Gene3D Ribonuclease Inhibitor 154 554 IPR032675 -
Sebi13g00123 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Sebi13g00123 954 SMART LRR_typ_2 384 407 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 106 130 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 238 262 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 335 358 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 58 82 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 287 311 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 359 383 IPR003591 -
Sebi13g00123 954 SMART LRR_typ_2 480 503 IPR003591 -
Sebi13g00123 954 SMART serkin_6 626 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00123 954 Pfam Leucine Rich Repeat 459 479 IPR001611 GO:0005515
Sebi13g00123 954 Pfam Leucine Rich Repeat 84 106 IPR001611 GO:0005515
Sebi13g00123 954 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 703 930 - -
Sebi13g00123 954 SUPERFAMILY L domain-like 3 222 - -
Sebi13g00123 954 Gene3D Phosphorylase Kinase; domain 1 586 701 - -
Sebi13g00123 954 SUPERFAMILY Protein kinase-like (PK-like) 606 916 IPR011009 -
Sebi13g00123 954 Pfam Leucine rich repeat 312 372 IPR001611 GO:0005515
Sebi13g00123 954 Pfam Leucine rich repeat 159 219 IPR001611 GO:0005515
Sebi13g00123 954 Gene3D Transferase(Phosphotransferase) domain 1 703 942 - -
Sebi13g00123 954 Pfam Leucine rich repeat N-terminal domain 3 31 IPR013210 -
Sebi13g00123 954 Pfam Protein kinase domain 628 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00123 954 ProSitePatterns Protein kinases ATP-binding region signature. 632 654 IPR017441 GO:0005524
Sebi13g00123 954 SUPERFAMILY L domain-like 289 543 - -
Sebi13g00123 954 PRINTS Leucine-rich repeat signature 383 396 - -
Sebi13g00123 954 PRINTS Leucine-rich repeat signature 338 351 - -
Sebi13g00123 954 Gene3D Ribonuclease Inhibitor 2 153 IPR032675 -
Sebi13g00123 954 FunFam Leucine-rich repeat receptor protein kinase EMS1 231 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00123 Sebi-Chr13 1405159 1408252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00123 2 923 Receptor kinase-like Gene Family AT3G47570 35.588 6.99e-164 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi13g00123 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00123 - - gmx:100792446 1381.31