Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00090 ATGGAAAAGTACGAGAAGTTGGAGAAGGTTGGAGAAGGCACTTACGGAAAAGTGTACAAGGCTAAGGAGAAAGCCACTGGCAAAATTGTTGCCCTGAAAAAGACCCGTCTGGAGATGGATGAGGAAGGTGTCCCTCCCACTGCCCTTCGAGAGGTCTCTCTCCTTCAGATGCTCTCTCAATCCATTTACACCGTCCGTCTCCTCAACGTCGAGCACGTCGACAAGGCCTCTAAGTCTGCCCTTCAAACCAAGCCCCTCCTCTATCTCGTCTTCGAGTATCTCGACACCGATCTCAAAAAATTCATCGATACTCACCGCAAGGGCTCAAACCCTAAACCCCTTTCCCCTACACTCATTCAGAGCTTCCTCTTCCAGCTTTTGAAGGGCGTCGCTCACTGCCACAGCCACGGTGTCCTCCACCGCGATCTCAAGCCACAGAACCTCCTTCTCGATCAGCAAAAAGGCATTCTCAAGATCGCCGACCTTGGCCTTGGACGCGCCTTCACTGTTCCTCTCAAGAGCTACACTCATGAGATCGTCACCCTCTGGTACAGAGCTCCTGAGGTTCTCCTCGGTTCCACTCACTACTCCACCGGCGTTGACATGTGGTCCGTTGGATGCATCTTTGCTGAAATGGCGAGAAGGCAGGCTCTGTTTGCAGGGGATTCTGAATTCCAGCAGCTCCTTAACATATTCAAGTATGATTATCTCATCACACTTTTTTATTTTCAACACTCATCATATTGCATATTTATACATTTTTTAATACTTCCTACCACTTGTCAATTTGAATTTTCTGATTTCATCCTTCAAAGGATTATGGGGACTCCAACGGAGGAGCAATGGCCTGGAGTTACTTCTCTGCGTGATTGGCACGTGTACCCACGGTGGGAGCCTCAGAACTTGGCAAGGACTGTGCCCTCCTTAGGACCTCATGGAGTGGACCTTCTCTCGAAAATGCTCAAGTATAATCCTGCCGATAGAATATCTGCCAAAGCAGCACTTGAACATCCCTACTTTGAAAGTCTTGACAAGTCTCAATTTTAA 1047 0.4842 MEKYEKLEKVGEGTYGKVYKAKEKATGKIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSIYTVRLLNVEHVDKASKSALQTKPLLYLVFEYLDTDLKKFIDTHRKGSNPKPLSPTLIQSFLFQLLKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMARRQALFAGDSEFQQLLNIFKYDYLITLFYFQHSSYCIFIHFLILPTTCQFEFSDFILQRIMGTPTEEQWPGVTSLRDWHVYPRWEPQNLARTVPSLGPHGVDLLSKMLKYNPADRISAKAALEHPYFESLDKSQF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00090 348 Pfam Protein kinase domain 4 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00090 348 SMART serkin_6 4 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00090 348 ProSiteProfiles Protein kinase domain profile. 4 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00090 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Sebi13g00090 348 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Sebi13g00090 348 Gene3D Transferase(Phosphotransferase) domain 1 97 347 - -
Sebi13g00090 348 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Sebi13g00090 348 PANTHER CELL DIVISION PROTEIN KINASE 1 341 - -
Sebi13g00090 348 FunFam Cyclin-dependent kinase B2,2 1 95 - -
Sebi13g00090 348 SUPERFAMILY Protein kinase-like (PK-like) 2 344 IPR011009 -
Sebi13g00090 348 FunFam Mitogen-activated protein kinase 94 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00090 Sebi-Chr13 1024903 1026752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00090 1 348 Core Cell Cycle Gene Families AT3G54180 73.851 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Sebi13g00090 Pkinase 3.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00090 K07760 - qsa:O6P43_016425 546.199