Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00088 ATGATGAACGGAAGAAACAGGTTCCCCTTTACTCCATCACAATGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCAGGTATCTCTATTCCACCTGATCTTCTCTTCACTATTAGAAGGAGCTATTTGGATTCTCCTTTGTCTACTAGGCTTTTGCCTAACCAGCCACAACATTTTGGATGGAACTATCTTCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACAGATGGGAAGAAATGGAGATGCTCAAAAGAGGCATATCCAGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAAATGCTTCAATATCTGCAATCTCATCAATCACTAAAAATAGTCCTGCACTAACCCCAACCACTCATTCTCTTTCACCCTTTACATCTTCTTCTCTGTCCTCTCAGACAAACCCTCAACATTCTTTCTATGGTTCCCATCTTCAACACTCCTTTCTCTATCATCACCAACCTTCAAGGTCATCTGGTATTGGTTTGTCATTTGAAGACAATAGTGCTCCTTTGTTTCTTGACACTGGCTCTTGCTCTCAGACTAACACAGATTGCAGGAACAGGTATGTTTATGGACAGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACAGAGCCTTCTGGTATTATGAAAAGCTTCTCTGCTTCCTCTATGGATGATGCTTGGCAACTCACACCACTTACTATGAGCTCTTCATCTTCTTCTTCAAAACAGAGGAGTTGCTCTGCTTTGTCCAATGATTACTCTTACTTGCAACTTCAGAGCCTCAGTGACCACTCAAAACAGCAAGAGCAAGATCAGAACTGCTACATATTAGGAGGTGAAATCAAGTGTGAAACACTCATGAAACTTGAAAAAGAAGAACCTCAGAAAACAGTTCACCGTTTCTTTGATGAATGGCCCCACAAAGGAAGAGGCTCATGGCTTGATTTGGATGATAAATCATCCACCACCCAACTATCAATTTCCATTCCCACATCTGCTCATGATTTTCCAACCTTCAATTCCAGAACCCACCATGATGGTTGA 1119 0.4182 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRRSYLDSPLSTRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTNASISAISSITKNSPALTPTTHSLSPFTSSSLSSQTNPQHSFYGSHLQHSFLYHHQPSRSSGIGLSFEDNSAPLFLDTGSCSQTNTDCRNRYVYGQKEEVDEHAFFTEPSGIMKSFSASSMDDAWQLTPLTMSSSSSSSKQRSCSALSNDYSYLQLQSLSDHSKQQEQDQNCYILGGEIKCETLMKLEKEEPQKTVHRFFDEWPHKGRGSWLDLDDKSSTTQLSISIPTSAHDFPTFNSRTHHDG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00088 372 Pfam WRC 78 120 IPR014977 -
Sebi13g00088 372 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sebi13g00088 372 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sebi13g00088 372 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Sebi13g00088 372 PANTHER GROWTH-REGULATING FACTOR 5 8 360 IPR031137 GO:0005634|GO:0006351|GO:0032502
Sebi13g00088 372 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sebi13g00088 372 MobiDBLite consensus disorder prediction 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00088 Sebi-Chr13 1012336 1013754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00088 7 120 GRF Transcription Factor Family AT3G13960 71.930 2.08e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Sebi13g00088 WRC 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00088 - - gmx:100781613 568.155