Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00080 ATGATGGCGAACCCAACCAAGAAGAGCAGGGGTCGTCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTATGTGGTGGTAATGTTGCTATCATTGTGTTCTCACCCGGTGAGAAGGTCTTCTCCTTTGGCCACCCCAATGTCGATGCGGTTATCAATCGCTATCTGACGGGGATCCCACCTCAAAACTCGGGCACCATGCAGTTCATTGAGGCTCATCGCAATGCCAATGTGTGTGAGTTGAACACGCAATTGGCTCAAATCAATAACCAACTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGGAAAGCAGCGCAGGCTCAGTTCTGGTGGGCTTATCCCATTGAGGAGATTAATAGAGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAGCTTAAGAAACATGTTACTAACTATTTTGACAGACTCCTCATTCAAGGTGCTGCTTCTGCTGCTGCCACCAACCCAACTCATCATCATCCTATTTTTACTGTTGCACCACCTGCTGGCTCCTCTTCCCACCTTTCTCTCCTTCAGCCACCTCCTCCACCTCAGGTGTTTCCACCGCAATTCTTTCAGAACCCTATGCTGCAAAATCATTTGTTTGATCATGGGAGCTTGATGCACCATCATGGATTTAACAACTTGGGAGGGTATGGAACTCCTAGATTCTTCTGA 762 0.4751 MMANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGGNVAIIVFSPGEKVFSFGHPNVDAVINRYLTGIPPQNSGTMQFIEAHRNANVCELNTQLAQINNQLESERKHGDELNRMRKAAQAQFWWAYPIEEINRVQLEQFKLALEELKKHVTNYFDRLLIQGAASAAATNPTHHHPIFTVAPPAGSSSHLSLLQPPPPPQVFPPQFFQNPMLQNHLFDHGSLMHHHGFNNLGGYGTPRFF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00080 253 PANTHER MADS BOX PROTEIN 12 165 - -
Sebi13g00080 253 Gene3D - 89 179 - -
Sebi13g00080 253 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Sebi13g00080 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Sebi13g00080 253 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Sebi13g00080 253 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
Sebi13g00080 253 Coils Coil 108 128 - -
Sebi13g00080 253 MobiDBLite consensus disorder prediction 1 23 - -
Sebi13g00080 253 CDD MADS_MEF2_like 11 81 IPR033896 GO:0000977|GO:0045944
Sebi13g00080 253 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Sebi13g00080 253 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Sebi13g00080 253 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Sebi13g00080 253 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Sebi13g00080 253 FunFam Agamous-like MADS-box protein AGL62 22 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00080 Sebi-Chr13 889695 890456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00080 6 165 Type I MADS-box Gene Family AT5G60440 61.963 6.24e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi13g00080 SRF-TF 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00080 - - gmx:100794751 281.952