Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00068 ATGGAAGAAGAAAAAGACGTGACAGACAAGAAAGGGACAAAGAACGAGGTTGTTCTGCAAATTTCAGGCAACGAAGAAGCTTTCTATGCAAAGAAGGAACGCAGAGATTTTAGAGGTTCCCCACTTGCTGAAAGCAGTTCCTTGTCTCCTCAGTTCAATTCCCAGATGGGTTCATCTTCATCGCCAAAAGGGTTCAGAGATTCAAACGATATTGAAGTGACCAAGAGATCTGGTAAGAAGTGGAAACTAAGGGGTTTGATTGAGTGGTTTGCTTTTGTTTGCATTGTGGGGTTTTTAATTGCAAGCTTGACGGTTCATAAGTTGCAACATAAGGGAATTTGGGGTTTGGAACTGTGGAAGTGGGTTCAAGAATCAATCTTTCATCAGTACATTCTTAGGACTCTTTCTGGCCCTCCTTTGATGGATATGGCTGCAACAGTAGGCAAGACTTCAAGTAGTGGTAGACTCAGTTTCAAGACCTTGATTAGAGATAAAGAGAATGAAGGGAAGAAAGAACAAGTCATTGATGTTGACAAGCTCAAGAAAATGAAACAAGAGAAAGTATCTGCTTGGACAATGAGAGGGTTGATTAATGTGATAAGGAGTTCTGGATTGTCTACCATCTCCTATACACCAGAGAGTGTTGATGAAGATGAGAGTGACCAGAAAGATAATGAAATTACTAGTGAGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTAGCCAAGCCAGGAAACAAGTACATTGAGAAGGAGGACCTCTTGCGCTTCATGAAAAATGAAGAAGTGGAAAATGTGCTTCCACTGTTTGAAGGGGCAGTTGAGACTGGAAAAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACCTTGAACGCCAATCACTTGTACATTCACTAAATGATGCCAAAACAGCAGTTGATGAATTGAATAGGCTTACTTCTGTAGTTGTCTTTATAGTGATCATTATTGTGTGGACTGTATTTGAAGCTATTGTATTTGTTTTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATTGATGGTGTTCAGATGGTTGTAGAAGAGATGAACATACTGACTACAGTCTTTTTGAGATATGACAATGAAAAGATATTCTACCCAAATTCAGTTCTAGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCAGTTGAATTTGCTGTTGATGTTTCTACTTCAATAGAAAGTATTGGAGCTTTAAAGGCTAGGTTAAAAACATACTTGGAGAATAGGCCTCAACACTGGCGTCCGAACCACAGTGTAATAGTTAAGGATATTGAGAATGTAAACAAGATGAAAATGGCTCTATATGTTACTCACACCATAAATTTTCAAAACTATGGGGATAAGAACAGCCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAAATCTTGAAGATCTTAATATCAAATATCATCTGTTGCCACAAGAAGTTCATCTCAGTTATGTAAGGTCAGAACACTTGACAGCACCAACAGTTTGA 1545 0.3909 MEEEKDVTDKKGTKNEVVLQISGNEEAFYAKKERRDFRGSPLAESSSLSPQFNSQMGSSSSPKGFRDSNDIEVTKRSGKKWKLRGLIEWFAFVCIVGFLIASLTVHKLQHKGIWGLELWKWVQESIFHQYILRTLSGPPLMDMAATVGKTSSSGRLSFKTLIRDKENEGKKEQVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISYTPESVDEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGNKYIEKEDLLRFMKNEEVENVLPLFEGAVETGKIKRKSLKNWLVKVYLERQSLVHSLNDAKTAVDELNRLTSVVVFIVIIIVWTVFEAIVFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSIESIGALKARLKTYLENRPQHWRPNHSVIVKDIENVNKMKMALYVTHTINFQNYGDKNSRRSELVLELKKNLEDLNIKYHLLPQEVHLSYVRSEHLTAPTV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00068 514 SUPERFAMILY Sm-like ribonucleoproteins 335 394 IPR010920 -
Sebi13g00068 514 FunFam Predicted mechanosensitive ion channel 345 394 - -
Sebi13g00068 514 MobiDBLite consensus disorder prediction 39 69 - -
Sebi13g00068 514 Pfam Mechanosensitive ion channel 338 491 IPR006685 GO:0016020|GO:0055085
Sebi13g00068 514 Gene3D - 345 394 IPR023408 -
Sebi13g00068 514 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 122 IPR016688 -
Sebi13g00068 514 PIRSF Memb_At2g17000 332 513 IPR016688 -
Sebi13g00068 514 PIRSF Memb_At2g17000 122 334 IPR016688 -
Sebi13g00068 514 PIRSF Memb_At2g17000 77 123 IPR016688 -
Sebi13g00068 514 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00068 Sebi-Chr13 824224 827317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00068 83 502 Mechanosensitive Ion Channel Family AT5G12080 50.885 1.51e-155 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00068 K22048 - gmx:100777332 674.085