Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00057 ATGAAGAAAGGAAGCTTAGGCCCCAGTCTCAAACTCACTGTTCCTGCATCTGATCAGGATTCTTTTGCCAAGTTCCTGACTGAAAGCGGGACGTTCAGTGATGGGAACCTACTTGTCAATAGGGATGGACTTCAAATTGTCTCTCAGAGTAAAGTGGAAACTCAACCCCCGATCAGGCCAGTAGACAACCAGTTAAATTTGGCAGACATTGATACAATCAAAGTGATTGGAAAGGGTAATGGGGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAGTTTTTTGCATTAAAGAGAATTCAAATGAATATTGAGGAGTCTGAGTGCAGGCAAATAGCAAAAGAGCTAAAAATCAATCAATCAACACAATGTCCTTATGTTGTTGTCTGGTACCAATCATTCTATGAAAATGGTGCCATATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTAGAGGATCTTCTGAAAAAAGTTAAAACAATTCCAGAGCCATATCTCGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCATCATGAGAAACATATTATCCACAGGGACATGAAAACTTCTAATCTGCTGATAAATCATAGAGGGGAGCCAGAGAGAATCAAAGGAAGCCAGAATGGGCACATGTACAACTACAAAAGTGATATATGGAGCTTTGGATTGATGTTGCTCGAGTGTGCTACAGGGAGGTTTCCATATACACCACCAGATCAAAGTGAAGGGTGGGAAAATATGTTCCAGCTCATTGAAGCCATTGTTGAAAAACCTTCACCTAGTGCCCCAGCTGATGAATTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACCATCAGCTCTGGACCTTATGAGGCATCCTTTTATCACCATGTATGACGACTTGGATGTGGATCTTTCAGCTTATTTCTCCAATGCGGGATCTACACCTGCAACCATATAA 987 0.4124 MKKGSLGPSLKLTVPASDQDSFAKFLTESGTFSDGNLLVNRDGLQIVSQSKVETQPPIRPVDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKRIQMNIEESECRQIAKELKINQSTQCPYVVVWYQSFYENGAISIILEYMDGGSLEDLLKKVKTIPEPYLAAICKQVLKGLMYLHHEKHIIHRDMKTSNLLINHRGEPERIKGSQNGHMYNYKSDIWSFGLMLLECATGRFPYTPPDQSEGWENMFQLIEAIVEKPSPSAPADEFSPEFCSFISACLQKNPRDRPSALDLMRHPFITMYDDLDVDLSAYFSNAGSTPATI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00057 328 Pfam Protein kinase domain 206 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00057 328 Pfam Protein kinase domain 72 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00057 328 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Sebi13g00057 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Sebi13g00057 328 ProSiteProfiles Protein kinase domain profile. 70 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00057 328 SUPERFAMILY Protein kinase-like (PK-like) 55 311 IPR011009 -
Sebi13g00057 328 Gene3D Phosphorylase Kinase; domain 1 43 149 - -
Sebi13g00057 328 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Sebi13g00057 328 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 14 205 - -
Sebi13g00057 328 SMART serkin_6 70 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00057 328 CDD PKc_MAPKK_plant_like 68 308 - -
Sebi13g00057 328 Gene3D Transferase(Phosphotransferase) domain 1 150 206 - -
Sebi13g00057 328 Gene3D Transferase(Phosphotransferase) domain 1 207 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00057 Sebi-Chr13 675546 678720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00057 27 323 MAP Kinase Kinase Gene Family AT4G26070 59.327 1.14e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Sebi13g00057 Pkinase 1.4e-32 CL0016