Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00056 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATTTACACTTGGGAATTTAATCCAAAAGGAGTCAGCAGTTACCACCCACATGGAGATAACTGGTTTAAAGCTTATGGCAAATACAGCAGCAGCTTTAATAATAAATCCTGCAATTGAGGGTTGTCAATCCTTCTCTGTTAGAAGTGAAAACCACACAGATATTAGTCCACAGCACCAAATTGCAGTGTCTGAAGAGGTAAAGGAGAATCAGGTTGGAGCTGACCTTGTTTCAGAAATGGTTATTGGAGGTGACAATAATGGGTTCCATCACCAGGCAAGAAATGAAGATGAATTCATGTTAGCTAAGGATTTTCAGTCTACACATAATCCAATCTCTCAATCTGCTGCTAGTGAAAAAAACAGTCCTTGTAGGGAGGAATCTGCTATTTTGAGGACTAATTGTTATGAAATAAATTCACCAAATACCATCAAGGTTGATGATAATATCCATGGTGGGTCCAATTTGACTGAGCTACATGCAGAACTAGAGCCAGTGCAGAAGAACATGGCTTCTGTTGTGATGCAATATGAGGGTGAAGATGGGAGTGGATCTGATAGGTCTGATCCAAAACCATTTGCTGTGTTTTATGAGATGCCAGAGAAGCAAGCATGTGGAACAAGCTGCCAGAATTCCTTGGAATTGAGTGGCACCCCTCTTTGGGGTTTTTCATCAGTTTGTGGAAGAAGACAGGAGATGGAAGATGCTATTGCTGTCAAGCCTCAACTTTTTCAAGTCCCTTCATGGATGCTGATGGAGGACCAAGTGAATGAAAACACAAAATACTCACCAGCCCATTTTTTTGGCGTCTATGATGGGCATGGGGGATGTCAGGTTGCCAACTACTGCCAGGAACATCTCCATTCAGTGTTGATTGAGGAGATAAAAGCTGCAGAATTTGAAAAGAATGGGAGAGACAACTGGCAGGACCAATGGAAGAGAGCATTCTCCAATTGTTTTCATAAAGTAGATGATGAGGTTGGAGGAGTTCATCCAAATAATGGTGGGTCTGAGTCAAGTACTGAAGAACCTCTTACTCCTGAGACTGTTGGCTCCACTGCGCTGGTTGCCATTTTGACTCAAACCCACATAATAGTTGCAAATTGTGGCGACTCAAGAGCAGTCTTGTATCGCGGAAAAGAAGCACTGCCATTGTCTGATGACCACAAACCAAATAGAGAGGATGAGTGGGAAAGGATAGAAGCTTCAGGAGGAAGGATCATACAATGGAATGGGTACCGAGTTCTGGGTGTTTTGGCAGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCAGACCCAGAAGTCAAGTGTGTCCTTCGAGAGAAAAATGATGAGTGCCTTATCCTAGCCAGTGATGGTTTATGGGATGTCATGACAAATGAAGAAGCATGTGAAATTGCACGAAAGCGAATCCTTCTTTGGCATAAGAAGAATGGCAACAGCGTATCAACAAGACAAGGCCACGGAGTTGATCCTGCGGCTCAGTCTGCTGCAGAGTATCTATCTAAACTTGCCCTTCAAAGGGGAAGCAAAGATAACATCTCTGTTATTGTTATAGACTTGAAGGCTCAAAGACAATTTAAGAGAAAAGCATAA 1641 0.4266 MEEITSTVAVPFTLGNLIQKESAVTTHMEITGLKLMANTAAALIINPAIEGCQSFSVRSENHTDISPQHQIAVSEEVKENQVGADLVSEMVIGGDNNGFHHQARNEDEFMLAKDFQSTHNPISQSAASEKNSPCREESAILRTNCYEINSPNTIKVDDNIHGGSNLTELHAELEPVQKNMASVVMQYEGEDGSGSDRSDPKPFAVFYEMPEKQACGTSCQNSLELSGTPLWGFSSVCGRRQEMEDAIAVKPQLFQVPSWMLMEDQVNENTKYSPAHFFGVYDGHGGCQVANYCQEHLHSVLIEEIKAAEFEKNGRDNWQDQWKRAFSNCFHKVDDEVGGVHPNNGGSESSTEEPLTPETVGSTALVAILTQTHIIVANCGDSRAVLYRGKEALPLSDDHKPNREDEWERIEASGGRIIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVKCVLREKNDECLILASDGLWDVMTNEEACEIARKRILLWHKKNGNSVSTRQGHGVDPAAQSAAEYLSKLALQRGSKDNISVIVIDLKAQRQFKRKA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00056 546 CDD PP2Cc 232 536 IPR001932 -
Sebi13g00056 546 ProSiteProfiles PPM-type phosphatase domain profile. 230 536 IPR001932 -
Sebi13g00056 546 MobiDBLite consensus disorder prediction 337 357 - -
Sebi13g00056 546 Pfam Protein phosphatase 2C 233 529 IPR001932 -
Sebi13g00056 546 ProSitePatterns PPM-type phosphatase domain signature. 277 285 IPR000222 GO:0043169
Sebi13g00056 546 MobiDBLite consensus disorder prediction 343 357 - -
Sebi13g00056 546 SMART PP2C_SIG_2 261 536 IPR001932 -
Sebi13g00056 546 SMART PP2C_4 220 534 IPR001932 -
Sebi13g00056 546 PANTHER PROTEIN PHOSPHATASE 182 536 IPR015655 GO:0004722|GO:0006470
Sebi13g00056 546 SUPERFAMILY PP2C-like 229 537 IPR036457 -
Sebi13g00056 546 Gene3D - 219 546 IPR036457 -
Sebi13g00056 546 FunFam Protein phosphatase 2C 16 218 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00056 Sebi-Chr13 671940 674102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00056 205 546 PP2C-type Phosphatase Gene Family AT1G17550 56.000 4.04e-136 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00056 K14497 - gmx:100812974 742.265