Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00051 ATGGCTGGTAAGGAGGAGGAAGATGAAGGAGCAGCTGGTTCGAGCTTAACCATGGAGAGGGTAGCTGTAGCCAAGAAATTCATTGAGAACCATTACAGGGCTCAGATGAAACACATCCAAGAACGCAAACAGAGGCGCTCAGTGCTACAAAAAGCATTAGAATCTTCCCATGTACCGAAAGAGGAACAGATCGATCTGCTGAAGGATTTAGAGCGCAAGGAGACTGAGTATATGCGGCTAAAAAGACATAAAATATGTGTTGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGGGAGGTAAGGCTCTGTCAGGAGAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAGAAGTCTGAAATGCTCAGCAGGGGGCAGGTTGAGCATGTTAGAGCTGAAAGGAATGTGCTGGCTGAAGTTGCCAGTGACTGCATTGTGAAACTGTATTACTCTTTTCAGGATGCTGAACACTTGTATCTTATAATGGAATATTTACCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACGTTGACTGAAACTGTGTCTAGATTTTACATTGCCCAAAGCGTTTTGGCCATAGAGTCAATTCATAAACATAACTACATTCATCGGGATATAAAACCTGATAACCTTCTATTGGACAAAAATGGTCATATGAAGCTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCAAATCTATCATCTATAAATGAAAATGAAGTATTGGATGATGAGAACTTGAATGATACCGTGGATGGTGATGGAGCCTTCCCAAATAACAGGAATGGTAGGCGTTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATGAATAGGAGGAAGCTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCTCCGGAAGTGTTACTGAAAAAGGGTTATGGCGTGGAGTGCGACTGGTGGTCTCTTGGTGCTATAATGTATGAGATGCTTGTTGGTTACCCCCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATTGTGCACTGGAAAAATCACTTAAAATTTCCAGAGGAAGCAAGATTGACTCCTGAAGCAAAGGATCTGATATGTAGGTTGCTTTGTAGTGTTCCACATAGGCTTGGTACCAGAGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAGAGATGTCATATGGGACAGGCTCTATGAAATGGACGCAGCATTTAAACCACAAGTCAATGGGGAGCTTGACACACAGAATTTTATGAAATTTGATGAGGTTGAACAACCAAAACCAACTAGATCTGGTTCCGGACCCATGAGAAAGATGCTCTTAACTCCTCAAGATCTTAGTTTTGTTGGCTATACATATAAGAATTTTGCTGCTGTCAAGGGGAATCGTCATTCTACTGATAAGGGGAAGAGCTTGTCACCACAGCGGCAATCAGTTGATTCCTCACACAGTAATGGAACCTAA 1488 0.4187 MAGKEEEDEGAAGSSLTMERVAVAKKFIENHYRAQMKHIQERKQRRSVLQKALESSHVPKEEQIDLLKDLERKETEYMRLKRHKICVDDFDLLTIIGRGAFGEVRLCQEKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVASDCIVKLYYSFQDAEHLYLIMEYLPGGDIMTLLMREETLTETVSRFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEVLDDENLNDTVDGDGAFPNNRNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPEEARLTPEAKDLICRLLCSVPHRLGTRGADEIKAHPWFRDVIWDRLYEMDAAFKPQVNGELDTQNFMKFDEVEQPKPTRSGSGPMRKMLLTPQDLSFVGYTYKNFAAVKGNRHSTDKGKSLSPQRQSVDSSHSNGT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00051 495 MobiDBLite consensus disorder prediction 479 495 - -
Sebi13g00051 495 FunFam Non-specific serine/threonine protein kinase 416 426 - -
Sebi13g00051 495 Pfam Protein kinase domain 289 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00051 495 Pfam Protein kinase domain 92 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00051 495 CDD STKc_NDR_like 88 462 - -
Sebi13g00051 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Sebi13g00051 495 Gene3D Phosphorylase Kinase; domain 1 88 173 - -
Sebi13g00051 495 SUPERFAMILY Protein kinase-like (PK-like) 73 447 IPR011009 -
Sebi13g00051 495 FunFam Non-specific serine/threonine protein kinase 174 241 - -
Sebi13g00051 495 Gene3D Phosphorylase Kinase; domain 1 416 426 - -
Sebi13g00051 495 CDD MobB_NDR_LATS-like 24 85 - -
Sebi13g00051 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 444 - -
Sebi13g00051 495 Gene3D Transferase(Phosphotransferase) domain 1 174 239 - -
Sebi13g00051 495 Gene3D Transferase(Phosphotransferase) domain 1 296 415 - -
Sebi13g00051 495 ProSiteProfiles Protein kinase domain profile. 90 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00051 495 ProSiteProfiles AGC-kinase C-terminal domain profile. 398 471 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi13g00051 495 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Sebi13g00051 495 SMART pkinase_C_6 398 463 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi13g00051 495 MobiDBLite consensus disorder prediction 470 495 - -
Sebi13g00051 495 SMART serkin_6 90 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00051 495 FunFam Non-specific serine/threonine protein kinase 51 173 - -
Sebi13g00051 495 FunFam Non-specific serine/threonine protein kinase 296 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00051 Sebi-Chr13 612567 620215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00051 7 482 AGC Kinase Gene Family AT2G19400 77.615 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Sebi13g00051 Pkinase 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00051 K08790 - gmx:100811359 871.692