Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00044 ATGGCAGGACTTGCACCTGAGGGGTCACAGTTTGATGGTCGTCAATATGATACCAAGATGAATGAGTTGCTTACATCTGATGGACAGGACTTCTTCACATCTTATGATGAGGTTTATGATAGTTTTGATGCTATGGGTTTGCAAGAGAATCTGCTGAGAGGCATCTATGCTTATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGGATTCTGCAGCAACTTGACTATACTTTGACAGAATGCCAAGCCTTGGTTTTAGCGCCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGATTATCTAGGTGTGAAGGTGCATGCTTGTGTGGGAGGTACCAGCGTTCGTGAAGACCAACGCATTCTATCGAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGACATGCTGCGCAGACAGTCCCTTCGGCCAGATTATATCAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCCCGGGGTTTTAAAGATCAGGAAGTTATGAACAAACCTGTGAGGATCCTTGTAAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGAGAGAGAGGAATGGAAGCTCGACACGCTCTGTGATCTTTATGAGACATTGGCAATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGAAAGGTTGATTGGCTGACTGACAAGATGCGAAGTCGAGACCATACAGTCTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTTTTAATAACTACTGATCTTTTGGCTCGTGGTATTGATGTGCAGCAAGTGTCTCTAGTTATAAATTATGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGGAGGTTTGGTAGAAAAGGTGTTGCCATCAACTTTGTCACAAAAGACGATGATAGAATGCTGTTTGACATCCAGAAGTTTTACAATGTGTTAATCGAGGAGCTGCCTTCAAATGTTGCTGAACTACTGTGA 1152 0.4427 MAGLAPEGSQFDGRQYDTKMNELLTSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYTLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQEVMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNVLIEELPSNVAELL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00044 383 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Sebi13g00044 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 364 IPR027417 -
Sebi13g00044 383 Pfam DEAD/DEAH box helicase 65 202 IPR011545 GO:0003676|GO:0005524
Sebi13g00044 383 SMART ultradead3 59 226 IPR014001 -
Sebi13g00044 383 CDD SF2_C_DEAD 223 353 - -
Sebi13g00044 383 SMART helicmild6 263 344 IPR001650 -
Sebi13g00044 383 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Sebi13g00044 383 PANTHER RNA HELICASE 32 202 - -
Sebi13g00044 383 Pfam Helicase conserved C-terminal domain 236 344 IPR001650 -
Sebi13g00044 383 Gene3D - 217 383 IPR027417 -
Sebi13g00044 383 FunFam Eukaryotic initiation factor 4A-III 217 383 - -
Sebi13g00044 383 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 222 383 IPR001650 -
Sebi13g00044 383 Gene3D - 15 216 IPR027417 -
Sebi13g00044 383 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 212 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00044 Sebi-Chr13 546189 548294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00044 1 383 Eukaryotic Initiation Factors Gene Family AT1G72730 80.676 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00044 K03257 - gmx:100786735 729.554