Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00042 ATGGAACCTCGCGTTGGAAATAAGTTTCGGCTTGGCCGGAAGATCGGTAGTGGTTCGTTTGGAGAGATCTATTTAGGTACTAATATTCAGACTAATGAAGAGGTTGCAATTAAGCTTGAAAATGTGAAGACAAAGCATCCCCAGTTGCTGTATGAGTCCAAGTTGTACAGAATACTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGTAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTCGAGTTTGTTCATTCTAAATCATTTCTACATCGGGATATCAAACCAGATAATTTCCTTATGGGCTTGGGAAGGCGAGCAAACCAAGTTTACTGTATTGATTTTGGTTTGGCGAAGAAATATAGAGATAGTACAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACCCACCTCGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTCTTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTTCCTTGGCAAGGACTTAAAGCAGGAAACAAGAAACAGAAGTATGAGAAGATCAGTGAAAAAAAAGTTTCTACCTCGATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCGTCATACTTCCATTACTGCCGCTCATTAAGATTTGATGATAGGCCAGATTATGCTTATCTGAAAAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACCATCTTGAAGTATCAGCAATCACAGCTAGCCACTCCTCCATCACGTGCCATTGGTCCTAGTGCTGGAACTAGTTCTGGAATGCCTCCAGCTGTGACTAATGCTGATAGACAGACAGGAGGGGAAGAAGGACGACCACTACCTGGTCTGGTTTCAGTGGATTCTTCAAGGCGAAGAATGTCAGGACCCATGTTAAATTCTGTAAATATTTCTTCAAAGCTGAAAAATCCAGTCTCCAGTGATGCTGCTGTTAATAAGGATGCTATGTTATCAAGTGCCAATGTCTTGGGCCAGTCAAGTGGATCATCAAGGCGAGTAGCTGTTTCCAGTAGTCGTGATGCATATGTTGGTGCTGATTCGGATCCTCATACTCGAACTACTGAGGCTAGCCCTGCAGCAATACACAGAATTTCTAGCGGGCAAAGAAGTTCACCGATTGGGTCTTCAGATCCCAAGAGAGTAACGTCATCTGGGAGAAACGCTTCTCATGTTAAGAATTTTGAGACTGCAGTCAAGGGCATTGAGGGCTTGCAATTAGAAAATGATGAGAGGGCCCATTATTAA 1434 0.4205 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPSRAIGPSAGTSSGMPPAVTNADRQTGGEEGRPLPGLVSVDSSRRRMSGPMLNSVNISSKLKNPVSSDAAVNKDAMLSSANVLGQSSGSSRRVAVSSSRDAYVGADSDPHTRTTEASPAAIHRISSGQRSSPIGSSDPKRVTSSGRNASHVKNFETAVKGIEGLQLENDERAHY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00042 477 PANTHER CASEIN KINASE-RELATED 9 387 - -
Sebi13g00042 477 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sebi13g00042 477 CDD STKc_CK1_delta_epsilon 8 282 - -
Sebi13g00042 477 MobiDBLite consensus disorder prediction 385 399 - -
Sebi13g00042 477 MobiDBLite consensus disorder prediction 385 457 - -
Sebi13g00042 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sebi13g00042 477 MobiDBLite consensus disorder prediction 303 362 - -
Sebi13g00042 477 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00042 477 MobiDBLite consensus disorder prediction 413 454 - -
Sebi13g00042 477 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00042 477 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Sebi13g00042 477 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Sebi13g00042 477 FunFam Putative Casein kinase I 1 85 - -
Sebi13g00042 477 MobiDBLite consensus disorder prediction 303 323 - -
Sebi13g00042 477 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00042 477 FunFam Casein kinase I isoform delta-like 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00042 Sebi-Chr13 525666 533660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00042 7 219 EF-hand Containing Proteins AT2G17890 26.244 5.93e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sebi13g00042 Pkinase 2.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00042 K02218 - gmx:100785851 825.469