Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00037 ATGCACCCCATGGAAGGTGTCTTTTCCCTCCCTGTAGCCGCCAGAACTGATTTTATCCATTCTTTAGCACAGTCTTTTGGCTGCTCTTACATTTGCCTCTGGGCTTATGATTCCATATCATCCAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGAGAAACAACCAACCAAGCTCTTCTTTGGAGACTGTAGCACAAGGGCTTTTTAACCAATATAGGAGTTTAACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAAGAATCGGTGTCCCTACCTTGAGCTACAACAATTGGAACTTCTGAGATTGGCATCAGCAGAAATACAAACACAATTCTATCTGGAAGCAAGGATTAAGACTGCTATTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCTGACATTCAAACAGCACTTAGAAGTTTGTTTCCTGAAGATTTTTCTAGACAATCCCAGCAAATTGATCAAAATCCACCTTCATCATCTTCATCTTCTTTGAGATCACTATCCACAGGTAGCCCTGAATATTCATCTCTGATATTTAATATTCCTGGCACTTCTCAATCCCACTTTCCTGAGACACTAGGAGTTGGAGGAGTGCCTCCAATGAGACCTGTGTCAAACACAGCCACAAGCCAAAACCAACAAGCCCTCCAACTCCAAGCATTGGCTCAAGTCACTCCAACTCCAAGTCAATTCCCTACACCAGAAACTGAACATGATGCAATAATGAGAGCAATCCTCAATGTTATTTCTTCACCTTCTCATCAACATCAAACCCAGCAAAACTGGCCTTATATGGTGCATCCAGAAGCTAGTGCTTTCATGAGGTATAGATCAGATAGAAGTTCCAATATGACACCCCAAATGGGGTCCAATTTCAGAAGGCAGAGCCTGATGAAGAGATCATTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGTATTCAAACAACACGTCCCTCTAGTACTCAGCTCCATCATATGATATCAGAAAGAAGAAGGCGTGAGAAACTAAATGAGAATTTCCAAGCACTCAGAGCATTACTTCCCCCAGGAACCAAGAAAGACAAAGCTTCCATACTGATAACTGCAAAGGAGACATTGAGCTCTTTGATGACTGAAATTGACAAGCTAAGCAAAAGAAATCAGGAATTGATGTCACTATTGCCAGCCAAAGAATCTACAACTGAAGAAAAAACCAAAGCTAGCAGCTTGTCATCAAATGAAAGATTAAATGTCCAAGTTTCACATGTACCAGAATCAAGTTCATCAGAAGAGCAAATGGTGGACTTGCAAGTGAATGTGAGAGGACAAATTTCTCAAGTTGATATATTGATCCGTTTATTGGAATTCTTAAAACAGGTTCACCATGTGAGCTTGGTTTCCATGGGGGCAAACACACATACAGAAGAAGGGAATGCCCTTCATCAACTAACTTTCAGGCTAAGAATTATTCAGGGAAGTGAATGGGACGAGGCTGCCTTCCAGGAAGCAGTAAAAAGAGTGGTTGCTGACTTGGTACAGTACCAAGTGGACCAATAG 1590 0.4107 MHPMEGVFSLPVAARTDFIHSLAQSFGCSYICLWAYDSISSNRLSFLDGFYNVRNNQPSSSLETVAQGLFNQYRSLTFDVNDDRVPGLAFKNRCPYLELQQLELLRLASAEIQTQFYLEARIKTAIFMGCNKGEIELGFLNMSQADIQTALRSLFPEDFSRQSQQIDQNPPSSSSSSLRSLSTGSPEYSSLIFNIPGTSQSHFPETLGVGGVPPMRPVSNTATSQNQQALQLQALAQVTPTPSQFPTPETEHDAIMRAILNVISSPSHQHQTQQNWPYMVHPEASAFMRYRSDRSSNMTPQMGSNFRRQSLMKRSFAFFRNLNFMRMRERIQTTRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLMTEIDKLSKRNQELMSLLPAKESTTEEKTKASSLSSNERLNVQVSHVPESSSSEEQMVDLQVNVRGQISQVDILIRLLEFLKQVHHVSLVSMGANTHTEEGNALHQLTFRLRIIQGSEWDEAAFQEAVKRVVADLVQYQVDQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00037 529 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 109 521 IPR044658 -
Sebi13g00037 529 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
Sebi13g00037 529 SMART finulus 344 393 IPR011598 GO:0046983
Sebi13g00037 529 Gene3D - 337 413 IPR036638 GO:0046983
Sebi13g00037 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 403 IPR036638 GO:0046983
Sebi13g00037 529 Coils Coil 377 404 - -
Sebi13g00037 529 CDD bHLH_AtbHLH_like 343 395 IPR045239 -
Sebi13g00037 529 MobiDBLite consensus disorder prediction 160 182 - -
Sebi13g00037 529 Coils Coil 344 364 - -
Sebi13g00037 529 MobiDBLite consensus disorder prediction 406 425 - -
Sebi13g00037 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00037 Sebi-Chr13 447288 450894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00037 15 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 43.382 3.27e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi13g00037 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00037 - - gmx:100807098 719.153