Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00029 ATGCTACCTTTAGATCTTAATGAAGAAGATCACACTCACCACCAGTTCTTCAGTACAAATTACCACCAAGCCTCTTCTTCTCTATCATATTCCATACTCTTCAACACGGATCAAGGAGGATCTTACTGTTGGGGACCAAAGCAGTTACAAAGTGATGTTGAAGAGGCCGAGAAGATCGGATCATGGGATCATCCAGCAGTTGAAAAGAATGGAAACGACCTGAAGAAAGAAGATGGTGAAGGTGAGGATTATATGAATTCAATGAAGTGGATGCCTTCAAAGATGAGAATCTTGCGGAGGATGATGCTATCAGATCAAACGTTAACGGCTTCTTCTTCTAATGAAAAGCAAAATTCATCACCACCTCCTCCTCTAGGAATTCAAACAGCCAGCAACAACAATTCTTCAAACAATGCTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCCAAGGAAAACAAGTTTCAAAGCAAAGGGAAGAAGAGGTCGAAAACTGATGAAGCAAAGTTGCAAAAGAAGCGTAAAGTACTTGGAAGGAAGCCAAACAAGAACAAGTTTAGTTTTGAGGAATTGAGAATAAGGTTGAGTAACAAGTTGCCTGATCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCCATTCTCCTCATGGCTTTGTCTCATGGTTTCGCTACTTAA 714 0.423 MLPLDLNEEDHTHHQFFSTNYHQASSSLSYSILFNTDQGGSYCWGPKQLQSDVEEAEKIGSWDHPAVEKNGNDLKKEDGEGEDYMNSMKWMPSKMRILRRMMLSDQTLTASSSNEKQNSSPPPPLGIQTASNNNSSNNAVRVCADCHTTKTPLWRTGPTGPKENKFQSKGKKRSKTDEAKLQKKRKVLGRKPNKNKFSFEELRIRLSNKLPDLQQVFPQDEKEAAILLMALSHGFAT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00029 237 Gene3D - 135 181 IPR013088 GO:0006355|GO:0008270
Sebi13g00029 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 161 - -
Sebi13g00029 237 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 8 162 - -
Sebi13g00029 237 SMART GATA_3 137 186 IPR000679 GO:0006355|GO:0043565
Sebi13g00029 237 MobiDBLite consensus disorder prediction 165 179 - -
Sebi13g00029 237 MobiDBLite consensus disorder prediction 153 179 - -
Sebi13g00029 237 ProSiteProfiles GATA-type zinc finger domain profile. 137 160 IPR000679 GO:0006355|GO:0043565
Sebi13g00029 237 MobiDBLite consensus disorder prediction 106 136 - -
Sebi13g00029 237 Pfam GATA zinc finger 143 162 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00029 Sebi-Chr13 305675 306825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00029 132 234 C2C2-Gata Transcription Factor Family AT5G49300 40.909 4.67e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi13g00029 GATA 1e-06 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00029 - - gmx:100792098 200.29