Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00024 ATGGAAGATGATAAGGCATGCAACATGGGTCTAAGTCTCCATCTTGGATTAGGAGGGTATGTGCCAAAAAAAGAGAACCAAACAGTGAACAAACCTGTGGCTAGCTTGGACCTAACGTTTGGGGACGAAGCCATTGATAAGGCATCAAAAGGATTCATTTTGAAGGGAGTGCATGAACCCCCATATGAACAGAGTACTGAAAACACCAATAGAAAGAAACTGAGACTCACAAAGGAGCAACAAGCCATGCTTGAGAACAGTTTCCAGCTTCATAACACCATTAACCCCGCTCAGAAACGGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTGGATTGTGAGTTTTTGAAGAAATGCTGTGAAAAACTAAGTGAGGAGAACCTAAGGTTGAAGAAGGAATTGCAAGAGCTGCGTGCATTAAAAGTTGGACCATTCTCGAAGGGTGCAAACTGGACCGTTTGTTCATCATGTGAGAAACTATTGAAGCCTAATGAAGGAAACATTGCCACCATTTCTAATGTGGTCCGAAACAACACCGCAAAATACTGCACATCAGCAAAATAG 624 0.4263 MEDDKACNMGLSLHLGLGGYVPKKENQTVNKPVASLDLTFGDEAIDKASKGFILKGVHEPPYEQSTENTNRKKLRLTKEQQAMLENSFQLHNTINPAQKRALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLSEENLRLKKELQELRALKVGPFSKGANWTVCSSCEKLLKPNEGNIATISNVVRNNTAKYCTSAK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00024 207 Coils Coil 126 160 - -
Sebi13g00024 207 Gene3D - 63 132 - -
Sebi13g00024 207 Pfam Homeobox associated leucine zipper 127 160 IPR003106 GO:0006355|GO:0043565
Sebi13g00024 207 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Sebi13g00024 207 CDD homeodomain 71 128 IPR001356 GO:0003677
Sebi13g00024 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 65 186 - -
Sebi13g00024 207 SUPERFAMILY Homeodomain-like 61 128 IPR009057 -
Sebi13g00024 207 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Sebi13g00024 207 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Sebi13g00024 207 Pfam Homeodomain 71 125 IPR001356 GO:0003677
Sebi13g00024 207 SMART HOX_1 69 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00024 Sebi-Chr13 262577 263602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00024 71 180 Homeobox Transcription Factor Family AT4G37790 70.175 9.31e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi13g00024 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00024 - K09338 gmx:100790522 233.032