Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00018 ATGGCACTGGATACCTTAGCTGTTCCAAGGATCAGGATGCAACAAGGTCAAGAACATATAGCCATACAAGAAGCTGCTTCAGCTGGGTTAAAGAGCATGGAGCATCTCATTCGAATCCTTTCATCTCAGTCCCCTTCTTCTTCTTCTGCGCACAACAACAACAACCACCTTAACTGCTCCGAAATCACCGACTTCACTGTCTCCAAGTTCAAGCAAACCCCTGGTTTGACTCTAGATTTCGCCAAATCCACCATCCTCAACTCTAAGCCCAAAACCATGGACGAAACTCTCACTTTGTCCACCACCACCAACTCTTCCTTCATGTCCTCCATCACCGCCGATGGCAGCGTCTCCGATGGCAAGGTGGGCCCCTTCTTGGTGCCCTCCGCCAAGCCCCCTCTATCCACCTCTCACCGGAAAAGGTGTCACGACGCCGCCCTCTCTTCTGGCCACTGCCATTGCTCCAAGAAAAGGAAATCACGAGTGAAGCGAACAATCCGCGTGCCGGCGGTAAGCTCTAAAATCGCCGATATTCCAGCGGATGAGTTCTCTTGGAGGAAATACGGTCAAAAACCGATCAAGGGTTCACCCTACCCTCGTGGATACTACAAGTGCAGCACCGTGAGAGGGTGTCCTGCTAGGAAGCACGTGGAGCGAGCCCAAGACGATCCCAAGATGCTGATCGTGACGTACGAAGGCGAGCACCGTCACTCGCAACCGCAACCCGCCGCAGGTTTCAACCTCCAATCGAATTGA 756 0.5278 MALDTLAVPRIRMQQGQEHIAIQEAASAGLKSMEHLIRILSSQSPSSSSAHNNNNHLNCSEITDFTVSKFKQTPGLTLDFAKSTILNSKPKTMDETLTLSTTTNSSFMSSITADGSVSDGKVGPFLVPSAKPPLSTSHRKRCHDAALSSGHCHCSKKRKSRVKRTIRVPAVSSKIADIPADEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHSQPQPAAGFNLQSN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00018 251 FunFam WRKY transcription factor 65 163 240 - -
Sebi13g00018 251 Pfam WRKY DNA -binding domain 181 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi13g00018 251 Gene3D WRKY domain 165 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi13g00018 251 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 242 IPR044810 GO:0003700
Sebi13g00018 251 ProSiteProfiles WRKY domain profile. 174 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi13g00018 251 SMART WRKY_cls 179 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi13g00018 251 SUPERFAMILY WRKY DNA-binding domain 177 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi13g00018 251 Pfam Plant zinc cluster domain 139 177 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00018 Sebi-Chr13 209413 210472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00018 1 239 WRKY Transcription Factor Family AT2G24570 45.253 1.65e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi13g00018 WRKY 3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00018 - - gmx:100127391 325.865