Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi139g00014 ATGACTCTCCCTCTACTCCCTCGGGCACACACTCTTTTCAAACACCCTTTCACCTACGAATGCAAACTCTGCCTCACTCTTCACAACAACGAGGGCAACTATTTGGCCCACACGCAGGGCAAGCGCCATCAGACCAATTTAGCCAAACGTGCAGCTCGCGAGGCTAAAGACGCTCCCGCTCAACCTCAACCTCACAAGCGCAAAGTCTCTGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGCTACCGGGTGACTAAGCAATATGATCCAGAGACAAAGCAAAGATCTCTTCTGTTTCAGATTGAATATCCTGAGATTGAAGACAATATGAAGCCAAGGCACCGATTCATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTTTTATTTGCTGCGGAACCATATGAAATAGTTGCTTTCAAGGTACCTAGCACAGAGATTGATAAGTCAACTCCAAAGTTTTTCTCACATTGGGACCCAGACTCAAAGATGTTCACACTGCAGTTGTATTTTAAATCCAAGCCACCAGAGGCAACCAAACCACAGCCTGCCTCTACAGCCAATGGTACAGCAGCACCAGGTGTTCCACCTAGGCCTTTGCCGCCGCCACCCCAAGCTCCACCACCACCACCTCCTCCTCCACAAGGGCTACCTCCTGGTGCACCTCCTCCCAGAGCTCTTCCACCTCCATTACCAGGATCGTTGCCACCTCCACCTCCAATGGGAGTAAATGGTCCTAGACCTGCACCTCCTGGTGGAATGCCATCTATCCCACCCCCACCCCCTGTTGGCAGTGGCACAGCAAGTTTCAACATGGTTTCAAGGCCTCCATTAATGCCACCTCCGCAAGGACCTCAGTGA 879 0.5051 MTLPLLPRAHTLFKHPFTYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDNMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEATKPQPASTANGTAAPGVPPRPLPPPPQAPPPPPPPPQGLPPGAPPPRALPPPLPGSLPPPPPMGVNGPRPAPPGGMPSIPPPPPVGSGTASFNMVSRPPLMPPPQGPQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi139g00014 292 SMART ZnF_U1_5 19 50 IPR003604 GO:0003676|GO:0008270
Sebi139g00014 292 Gene3D Classic Zinc Finger 12 56 - -
Sebi139g00014 292 MobiDBLite consensus disorder prediction 49 63 - -
Sebi139g00014 292 Pfam Zinc-finger of C2H2 type 19 43 - -
Sebi139g00014 292 ProSiteProfiles Zinc finger matrin-type profile. 19 49 IPR000690 GO:0003676|GO:0005634|GO:0008270
Sebi139g00014 292 Gene3D - 60 185 - -
Sebi139g00014 292 PANTHER SPLICING FACTOR 3A SUBUNIT 2 18 276 - -
Sebi139g00014 292 MobiDBLite consensus disorder prediction 180 292 - -
Sebi139g00014 292 FunFam Splicing factor 3a subunit 2 61 185 - -
Sebi139g00014 292 SUPERFAMILY beta-beta-alpha zinc fingers 18 49 IPR036236 -
Sebi139g00014 292 SMART CactinC_cactus_3 56 184 - -
Sebi139g00014 292 MobiDBLite consensus disorder prediction 49 71 - -
Sebi139g00014 292 MobiDBLite consensus disorder prediction 200 271 - -
Sebi139g00014 292 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 77 171 IPR031781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi139g00014 Sebi-Chr139 488384 493191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi139g00014 2 195 C2H2 Transcription Factor Family AT2G32600 81.443 1.61e-116 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi139g00014 K12826 - gmx:100818114 365.54