Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi138g00069 ATGAACTCCAACAACAACAGCAACAATGAGGCCATAGAGGCTGACAGTAACACATTAGCAGATGATGGTGATTCTAGAGGTCACATGAAGAAGGGGCCTTGGACCCCACAAGAAGATAAGATTTTGATCGAGTACGTGAATAAGCATGGTGAAAGGAATTGGAACGCTGTGCAGAAAAATTTCGGGTTATTAAGGTGTGGAAAAAGTTGCAGACTTAGGTGGGCTAATCATCTAAGGCCCAATCTAAAGAAAGGATCTTTTTCTCAAGAAGAAGAAAAAATCATCGTCGATCTTCATGCCAAAATTGGAAACAAATGGGCTCGAATGGCCTCGCAGTTACCTGGAAGGACCGACAATGAAATAAAGAACTTTTGGAATACAAGAATGAAAAGGAGGCAAAGAGAAGGGTTACCCCTTTATCCCCCTGAAGTCTATGCAGAAGCAAATGCATACCATCAACTTCTTCGCCAACAGCAACACCAGTCGGGAAAACCATACCCTTCTTCATCTTTATCATCATTTTCTTTACTCTTATCTTCTTGCTACCCAAAGAAGCTCGATGAGCCTAGTCATTATTCAACTATGAAAAGCCACCTTGATTTTTCTAATTATTACACCAATCCTTCCCAACAGTTCAAGCATTCCAATGAAAAAAAAGATTATGAAAATCTCACTTTCCCATTCTCCCCTCTCTCTCCATATGGATCTTCATCGTCAACTCTTTACAACCAAAGTTTTGCTGCTCATAATGCAACCCCAACTCATGATTCATATGATTGTCAATATTCTAGAAGCTATGATCATGGCTTCAATACAGGATCTCCATATGAAACCCTTCCTAATTTGGTGCCAGGTTCCACCACTGAGATCTCTTTGAGCCAAATAGCTCCCAACTTAGCAACTCCTGTTTCATCCAATGTTAGTGGTGTTGATGGATTCATAGGAGCTTCAAGCATCACTAATGACTATAATGAAGTTATGTCATTATCTCCTCAAGGAAACAGTGGTTTGTTGGATGCTTTAGTGGAGGAAGCAAAATATATTTCTCGTAAAGACAAGTCCAAGAGTGAGGATTCAATTGTACCAAGGAAGTTATGTTATAAGAGGAAAAGCATGGTAAGTGAGGAAAATACAAAGGAAGAAGACTCTGTGCTAGTTGCGTCAGTCGTGAAAAACAATGGGGACATTAAGGAAAACCAGAAGGATGAATTTATCCCTTCTCAATTATCAACAGGAAAGAAACCAATTGGTGAGGATCCGTTGGAAGAGATAAAATCCATGGATGATGATGACGACTTGTTTAGCTTGCTCAATAATTTTCCCTCAGAAATGCCTGTGCCAGAGTGGTACCGTAAAGGAGAAAGTCAGTCACTGGGACTTGAAACTCAACTTGATGCTTCTTCACCTAGCCCTACTCATCAAGAGTTTGCCTGGACTCTCGGAACTTCCTGGAACAATGCGCCTGGCATATGCTAA 1476 0.4065 MNSNNNSNNEAIEADSNTLADDGDSRGHMKKGPWTPQEDKILIEYVNKHGERNWNAVQKNFGLLRCGKSCRLRWANHLRPNLKKGSFSQEEEKIIVDLHAKIGNKWARMASQLPGRTDNEIKNFWNTRMKRRQREGLPLYPPEVYAEANAYHQLLRQQQHQSGKPYPSSSLSSFSLLLSSCYPKKLDEPSHYSTMKSHLDFSNYYTNPSQQFKHSNEKKDYENLTFPFSPLSPYGSSSSTLYNQSFAAHNATPTHDSYDCQYSRSYDHGFNTGSPYETLPNLVPGSTTEISLSQIAPNLATPVSSNVSGVDGFIGASSITNDYNEVMSLSPQGNSGLLDALVEEAKYISRKDKSKSEDSIVPRKLCYKRKSMVSEENTKEEDSVLVASVVKNNGDIKENQKDEFIPSQLSTGKKPIGEDPLEEIKSMDDDDDLFSLLNNFPSEMPVPEWYRKGESQSLGLETQLDASSPSPTHQEFAWTLGTSWNNAPGIC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi138g00069 491 MobiDBLite consensus disorder prediction 1 15 - -
Sebi138g00069 491 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Sebi138g00069 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Sebi138g00069 491 MobiDBLite consensus disorder prediction 19 34 - -
Sebi138g00069 491 MobiDBLite consensus disorder prediction 1 34 - -
Sebi138g00069 491 FunFam MYB-related transcription factor 30 83 - -
Sebi138g00069 491 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 458 - -
Sebi138g00069 491 Gene3D - 30 83 - -
Sebi138g00069 491 Gene3D - 86 132 - -
Sebi138g00069 491 SMART sant 30 80 IPR001005 -
Sebi138g00069 491 SMART sant 83 131 IPR001005 -
Sebi138g00069 491 FunFam Transcription factor GAMYB 86 132 - -
Sebi138g00069 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 78 IPR017930 -
Sebi138g00069 491 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Sebi138g00069 491 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Sebi138g00069 491 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Sebi138g00069 491 CDD SANT 33 78 IPR001005 -
Sebi138g00069 491 CDD SANT 86 127 IPR001005 -
Sebi138g00069 491 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi138g00069 Sebi-Chr138 1353454 1356053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi138g00069 3 416 MYB Transcription Factor Family AT5G06100 37.339 2.61e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi138g00069 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi138g00069 K09422 - gmx:100798860 494.197