Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi138g00050 ATGGAGGTTCTCTGGGTGAGGGCGTTGTTTCTCTTGGTTTTCTGCTTGTGGAATCCCATGGAAGTGGTGGGAAGGACAGGGATTACCATGGTGAACTCTACTGTTCCTTCAAGAGCCAATGTTTTGAGAATTGGAGCACTGTTTACTTTTGATTCTGTAATTGGAAGATCAGCTAAACCTGGAATCTTGGCTGCAATTGAAGATGTTAATGCTAATAAGAGCATTCTCCCTGGCGTTAAGCTGGAATTGATTTTACACAATACTAACTGCAGTCCGTTTCTTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAATTGTTGCTGCTATTGGTCCACTATCCTCTGGAATAGCTCATGTCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGTGCAACAGACCCTTCTCTATCTTCTCTGCAGTACCCATATTTTGTCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAATTGCTGACTTGGTTGATTATTATAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGATAATGGAAGGAATGGGATTGCAGCACTAGGAGATGCTCTTGCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGAGCCTCAAAGAATGATATCAGTGACTTGTTAAATGGAGTAAACTTGATGGAATCACGGGTCTATGTTCTTCATGTTAATCCTGATTCTGGTATGACAGTTTTTTCTATTGCCAAGAAGCTTGGAATGATGACCAGCGGCTATGTATGGATTGCAACAGATTGGCTTCCTTCAGTGTTGGATTCAATGGAGTCAGTGGACACTAACACAGTAAATATGCTACAAGGGGTTGTGGCTTTGCGTCATCACACTCCTGATACTAATCTCAAGAAGCGTTTTCTCTCTAGGTTGAAGAAACTACAAGGCATGGAGAATGCAAGCTTCAACTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCACATGCTCTTGATACTTTTCTTAAAGAAGGTGGAAACATTTCTTTCTCCTCTGATCCTAAGTTGCTTGACACAAATGGAAGCATGTTGCATTTATCATCACTTCGTGTATTTGATGGTGGTCCATTGTTTCTCCCAACAGTTATGAGAATGAACTTCACTGGTATGAGTGGTCAAATTCAGTATGATGTGGAAAAGAATCTAATTCATCCTGCTTATGATATCTTGAACATTGGTGAATCTGGATCCAGGAGAATTGGTTATTGGTCTAATTACTCTGGTCTATCAGTTTTACCTCCTGAAATTTTGTATAAGAAACCACCTAACACTTCAACAATCAATCAAAAACTTTACAGTGTTTTATGGCCTGGAGAAACTGTAGCTACACCAAGAGGGTGGGTGTTCCCCAACAATGGAAAGCCACTGCGAATAGCAGTGCCTCACCGAATAAGCTACTTGGAGTTTGTTGCTAAAGACAAGAACCCTCCTGGAGTAAGAGGCTTTTGTATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCACGACAATATATATTATATGGAAATGGTGAAAGAAATCCCAACTACAATGAACTTGTCAATCAGGTTGCACTAAATAACTATGATGCAGCTGTTGGAGATGTCACAATTGTTCCAAACAGGACAAGAGTTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCATGGGCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTCTTTCTTTTTGTGGGAGCTGTTGTATGGATTCTTGAGCACCGGCACAATCCAGAGTTTCGTGGTAAACCGAAGAAACAACTTATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGCGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTACAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGGAAGTATCTGATAGATGAACTCAATATACAAGAATCAAGGATAGTTACACTGAAAGATCAGCAGGCATATGTTGATGCCCTCACACGTGGACCAAAAGGAGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTATATTGAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACTGTTGGGCAGGAGTTCACAAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCCATTCTCCAACTTTCTGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTTTAAAACATGAATGTACAACACAACTGGATGATGTTGATTCAAATAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTTTCCTTGCTTTGATTATATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATTCAGCCCACAGCCTGAGGAAGTTGATGAGGAAATTCAACCAGTCAGTTCTAGAAGGACTCTCAGAACTCCAAGCTTCAAGGACTTGATTGAGTTTGTGGATAAGAGAGAAAAAGAAATCAAAGAGATACTTAGGCAGAAGAGTAAAAAAAGGAGGCGCAGCCAGAGTTTAGATGGCCAATCTAGTTCACCCACCTAA 2802 0.4101 MEVLWVRALFLLVFCLWNPMEVVGRTGITMVNSTVPSRANVLRIGALFTFDSVIGRSAKPGILAAIEDVNANKSILPGVKLELILHNTNCSPFLGTVEALQLMENEIVAAIGPLSSGIAHVISHVVNELHVPLLSFGATDPSLSSLQYPYFVRTTHSDYFQMYAIADLVDYYRWREVIAIFVDDDNGRNGIAALGDALAKKRAKISYKAAFPPGASKNDISDLLNGVNLMESRVYVLHVNPDSGMTVFSIAKKLGMMTSGYVWIATDWLPSVLDSMESVDTNTVNMLQGVVALRHHTPDTNLKKRFLSRLKKLQGMENASFNSYALYAYDSVWLAAHALDTFLKEGGNISFSSDPKLLDTNGSMLHLSSLRVFDGGPLFLPTVMRMNFTGMSGQIQYDVEKNLIHPAYDILNIGESGSRRIGYWSNYSGLSVLPPEILYKKPPNTSTINQKLYSVLWPGETVATPRGWVFPNNGKPLRIAVPHRISYLEFVAKDKNPPGVRGFCIDVFEAAINLLPYPVPRQYILYGNGERNPNYNELVNQVALNNYDAAVGDVTIVPNRTRVLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGKPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLIDELNIQESRIVTLKDQQAYVDALTRGPKGGGVVAIVDELPYIELFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHECTTQLDDVDSNKLSLSSFWGLFLICGIACFLALIIFFVRVFCQYMKFSPQPEEVDEEIQPVSSRRTLRTPSFKDLIEFVDKREKEIKEILRQKSKKRRRSQSLDGQSSSPT 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi138g00050 933 Pfam Receptor family ligand binding region 60 413 IPR001828 -
Sebi138g00050 933 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Sebi138g00050 933 MobiDBLite consensus disorder prediction 914 933 - -
Sebi138g00050 933 FunFam Glutamate receptor 472 588 - -
Sebi138g00050 933 SUPERFAMILY Periplasmic binding protein-like I 37 468 IPR028082 -
Sebi138g00050 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Sebi138g00050 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Sebi138g00050 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Sebi138g00050 933 FunFam Glutamate receptor 157 317 - -
Sebi138g00050 933 Pfam Bacterial extracellular solute-binding proteins, family 3 532 819 IPR001638 -
Sebi138g00050 933 Gene3D - 785 817 - -
Sebi138g00050 933 FunFam Glutamate receptor 588 718 - -
Sebi138g00050 933 SUPERFAMILY Periplasmic binding protein-like II 452 820 - -
Sebi138g00050 933 Gene3D - 589 713 - -
Sebi138g00050 933 FunFam Glutamate receptor 714 822 - -
Sebi138g00050 933 Pfam Ligand-gated ion channel 820 851 IPR001320 GO:0015276|GO:0016020
Sebi138g00050 933 SMART GluR_14 478 820 IPR001320 GO:0015276|GO:0016020
Sebi138g00050 933 Gene3D - 64 405 - -
Sebi138g00050 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 888 IPR015683 -
Sebi138g00050 933 PIRSF IGluLR_plant 3 933 IPR017103 -
Sebi138g00050 933 Gene3D - 472 588 - -
Sebi138g00050 933 Coils Coil 901 921 - -
Sebi138g00050 933 CDD GluR_Plant 475 818 - -
Sebi138g00050 933 Gene3D - 157 430 - -
Sebi138g00050 933 Gene3D - 766 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi138g00050 Sebi-Chr138 871614 875973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi138g00050 38 785 Ion Channels AT1G05200 67.914 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi138g00050 K05387 - gmx:100799912 1498.03