Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi138g00046 ATGCCAGCTGGTATTATGATTCCGGCGAGAAACATGCCCTCCATGATTGGAAGAAACGGCGCCGTTGGTGGATTTGGATTATCTTCAGGACTCTCTCTTGGTCAGCAGCCAAACCTAATGGAAGGTGGTCATCTTCTCCCACTGGATCACATGGCTCAGAACACTACCTCAGAGAGTGATATCCCCAGAATCCGTGAAGATGAGTTCGTCGACAGTGCCACCAAGTCAGGTAGTGAAAACCAGGAAGGTGCTTCAGGTGAAGACCAAGACCCTCGTCCCAATAAGAAGAAGCGTTACCACCGCCACACACAGCATCAGATCCAGGAAATGGAAGCGAAGGAACTCAGCCGAGAGTTAGGGTTAGAGCCATTACAGGTCAAGTTTTGGTTCCAAAACAAGCGCACTCAGATGAAGACCCAACATGAGAGGCATGAGAACACACAGCTTAGAACTGAGAATGAGAAGCTTCGTGCGGATAACATGAGGTTCAGGGAAGCTCTTAGCAATGCCTCTTGTCCTAATTGTGGTGGACCAACAGCTATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTAAGAGAAGAGGTATCATGGCATGGTGTGATTGATAGGATTTCTGCCATTGCTGCCAAGTATGTAGGCAAGCCTGTGGGTAGCTATCCACTTCTTTCATCACCTTCATCTGTTCCTCCTCGCCCTCTTGAGCTTGGGATAGGTGGTGGTTTTGGTGGCCAACCTGGAGGAGGCATTGGTGGTGGAGATATGTATGGAGCTGGAGATCTTCTTAGGTCAATAAGTGGACCCACTGAAGCTGATAAACCAATAATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTAATTGGAATGGCACAAATGGGTGAGCCACTTTGGTTAACCACCCTGGATGGCTCCACCACTGTGCTCAATGAGGATGAATACATCAGATCCTTTCCAAGAGGAATTGGACCAAAGCCTGCTGGATTCAAGTGTGAAGCTTCAAGAGAAACCGCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGACACGAACCAATGGTCCACAGTGTTCTCTGGAATAGTCTCAAGAGCAATGACTCTAGAAGTGCTATCAACTGGGGTAGCGGGGAACTATAATGGCGCATTGCAAGTGATGACAGCAGAACTACAAGTACCTTCACCTCTTGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGGACTTGGGCAGTGGTTGATGTGTCTTTGGATAATTTGCGCCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTGATATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAGTCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCTACAAATATTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACTGCTCATACATGGACAACACTTTCTGGGACTGGTGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCTGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCACCAAAAAGAGTTTTTGAATTCCTCCGAGATGAGAACTCTAGAAGTGAGTGGGATATCCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACATATTGCTAACGGCCGAGATACCGGGAATTGTGTCTCTCTTCTTCGAGTTAATAGTGCCAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAGTTGCACCGACTCAACAGGCTCTTTTGTTATATATGCTCCTGTAGACATTGTAGCAATGAATGTGGTTCTAAATGGAGGGGACCCAGATTATGTAGCCCTTCTCCCTTCAGGGTTTGCTATACTCCCAGATGGGACCACATCACATGGTGCTGGCATTGGTGAAACTGGACCTGGTGGATCTCTCTTGACTGTTGCATTTCAAATATTAGTTGATTCAGTTCCAACCGCAAAGCTTTCTCTTGGATCTGTTGCAACAGTTAACAATCTTATTGCATGCACTGTTGAGAGAATCAAGGCTTCACTATCTGGTGAAGTTGCTTGA 2292 0.4599 MPAGIMIPARNMPSMIGRNGAVGGFGLSSGLSLGQQPNLMEGGHLLPLDHMAQNTTSESDIPRIREDEFVDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEVSWHGVIDRISAIAAKYVGKPVGSYPLLSSPSSVPPRPLELGIGGGFGGQPGGGIGGGDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGSTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVNLVEILMDTNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGAGIGETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi138g00046 763 Pfam START domain 285 504 IPR002913 GO:0008289
Sebi138g00046 763 SUPERFAMILY Bet v1-like 275 506 - -
Sebi138g00046 763 CDD START_ArGLABRA2_like 279 503 - -
Sebi138g00046 763 SUPERFAMILY Bet v1-like 524 755 - -
Sebi138g00046 763 SMART HOX_1 94 144 IPR001356 GO:0003677
Sebi138g00046 763 Pfam Homeodomain 103 138 IPR001356 GO:0003677
Sebi138g00046 763 Gene3D - 334 501 IPR023393 -
Sebi138g00046 763 SUPERFAMILY Homeodomain-like 85 140 IPR009057 -
Sebi138g00046 763 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Sebi138g00046 763 FunFam Homeobox-leucine zipper protein GLABRA 2 284 503 - -
Sebi138g00046 763 MobiDBLite consensus disorder prediction 72 106 - -
Sebi138g00046 763 ProSiteProfiles 'Homeobox' domain profile. 96 140 IPR001356 GO:0003677
Sebi138g00046 763 SMART START_1 284 504 IPR002913 GO:0008289
Sebi138g00046 763 Gene3D - 96 147 - -
Sebi138g00046 763 Coils Coil 146 166 - -
Sebi138g00046 763 CDD homeodomain 96 141 IPR001356 GO:0003677
Sebi138g00046 763 ProSiteProfiles START domain profile. 275 507 IPR002913 GO:0008289
Sebi138g00046 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 758 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi138g00046 Sebi-Chr138 756739 761348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi138g00046 64 763 Homeobox Transcription Factor Family AT1G05230 77.654 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi138g00046 START 4e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi138g00046 K09338 - gmx:100809556 1333.16