Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi138g00038 ATGAACGACCTCCTCACTGATTCATTTGTTAGTGAGGCTAATCATGGTCAGCCTTCCAGACAAAGTGATATTGAAATGGGAATGCAGGTTCCAAGAAGCCACTCTGATATGGGAATGGATGCTTTTAATAAGCAGATCCAAGATGCTGATAAACACATTGATAAGCTGTCTGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAGCAAAAATAGAAGCTATAAACAGAGATAACCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACGGGTATTGACAGAGCTAGGATGAATATGACAAATGCCTTGACTAAGAAGTTCAAGGATCTCATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAAAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAAGGCAATTCTTGAAGCAGGCCGAGGACAGGTTGTAAGCACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATATACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTCAACACCGCAGTCGATCATGTCCAGAGAGGGACATCTGCACTTCAAAATGCTAAGAAACTCCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTGCTAGTAGTAGCTATCATAGTTGTTGGTGTTCTTCATCCTTGGAAGAGTAGCTAA 924 0.3961 MNDLLTDSFVSEANHGQPSRQSDIEMGMQVPRSHSDMGMDAFNKQIQDADKHIDKLSGLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRDNLNNRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNTAVDHVQRGTSALQNAKKLQKNSRKWMCIAIIILLLVVAIIVVGVLHPWKSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi138g00038 307 FunFam Syntaxin 132 34 163 - -
Sebi138g00038 307 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Sebi138g00038 307 CDD SynN 39 196 IPR006011 GO:0016020
Sebi138g00038 307 PANTHER SYNTAXIN 39 289 IPR045242 -
Sebi138g00038 307 FunFam Syntaxin 132 202 302 - -
Sebi138g00038 307 Gene3D - 34 163 - -
Sebi138g00038 307 MobiDBLite consensus disorder prediction 1 26 - -
Sebi138g00038 307 Gene3D - 203 302 - -
Sebi138g00038 307 SMART tSNARE_6 204 271 IPR000727 -
Sebi138g00038 307 SMART SynN_4 34 160 IPR006011 GO:0016020
Sebi138g00038 307 Pfam SNARE domain 245 297 IPR000727 -
Sebi138g00038 307 CDD SNARE_syntaxin1-like 208 269 - -
Sebi138g00038 307 Coils Coil 46 76 - -
Sebi138g00038 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Sebi138g00038 307 Pfam Syntaxin 42 244 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi138g00038 Sebi-Chr138 458364 461672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi138g00038 1 304 SNARE and Associated Proteins AT3G03800 61.513 1.75e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi138g00038 K08486 - gmx:100800991 538.495