Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi138g00008 ATGGAAGCATTATGTGAGTTTTGTGGGGTTGCAAGAGCTGTGGTTTTCTGCAAGGCAGATTCTGCTCGTCTCTGTTTGCATTGTGATGAATGTGTACACTCTGCCAATTCTTTGTCTCGGAGGCACCCTCGTTCTCTTCTCTGTGATAAGTGCAATTTTGAGTCAGCAACTGTCCTCTGCATGGATCATAAATGGTCTCTTTGTCAAGTTTGTGATTGGAATACAAATGAATGTTCAGTATTGGGACATAGGTGTTTGGCATTGAATTTCTACACTGGTTGTCCCTCTTTGGATGAGTTTTATAGGATTTGGCCCCATGTGGTTGATGCTAATTCCTTATGTGGTGGTTTGGAATCACTTGGTACATTGCCTAAAAATGATAGCTGCACTAGCAAGCATTTGGAGCAACTTGATGAGGTTGGTTCCTCTGGTTTGGGGAGTGACATGTTGAATGAAGTAGAACCATGTGTCAAATATGAACCTTGGATGGAGCAATCTCCCATCATTCCTTCAAATCCAAACTACACACAGTATTGCAAAGATGAAGCATTTTTCTTTCCTCAAGACTCAAACCAACCAAAGGCATTACTTTCTACTTGTTTTTATTTTGGATTTCATGAGGAGAATGGTCCTTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAGAGGCTGATGAAATATTTGGCTGCTCTCAAAGTGCCTCAAGATACCACCTTGAAGATGGAGAAATAGATTGTCTATTAATGGATAGGAACATACCAGTCACAAAATCCAGTAGTCTTATTGAGAGTGCCATGGAGGCATCATCATCAGTCCAACAAGATTGTGTGGCTTTTCCATCATCCGGGGCTGGTGGGGCTGCTAGTGTAATGCAGACCATCAACAGTAGTGCAAATTGTGCACTTATGACTCCTAGCTGCAACAGAAACATCAACCTGGGATTTCCTCAGGGCCAAATTCCTTCAAGCATGTCAATTCAAATACCCAACATTACGGTTGAAAATAATGCTACTGAATATCAAGATTGTGGGTTATCGCCATTGTTTCTGTCAGGTGAATCCCATTGGGAACCAAATTTGGAGGTTACATGCCCTCAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATTAGATATGCATCTCGCAAAGAAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGATCCTCTTGAAACAAAGGAGACCTAA 1284 0.4081 MEALCEFCGVARAVVFCKADSARLCLHCDECVHSANSLSRRHPRSLLCDKCNFESATVLCMDHKWSLCQVCDWNTNECSVLGHRCLALNFYTGCPSLDEFYRIWPHVVDANSLCGGLESLGTLPKNDSCTSKHLEQLDEVGSSGLGSDMLNEVEPCVKYEPWMEQSPIIPSNPNYTQYCKDEAFFFPQDSNQPKALLSTCFYFGFHEENGPCEGLNVDDVQLNFEEADEIFGCSQSASRYHLEDGEIDCLLMDRNIPVTKSSSLIESAMEASSSVQQDCVAFPSSGAGGAASVMQTINSSANCALMTPSCNRNINLGFPQGQIPSSMSIQIPNITVENNATEYQDCGLSPLFLSGESHWEPNLEVTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKERADTRKRVKGRFVKAGEAYDYDPLETKET 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi138g00008 427 ProSiteProfiles CCT domain profile. 371 413 IPR010402 GO:0005515
Sebi138g00008 427 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sebi138g00008 427 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi138g00008 427 Pfam CCT motif 371 413 IPR010402 GO:0005515
Sebi138g00008 427 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Sebi138g00008 427 CDD Bbox1_BBX-like 4 47 - -
Sebi138g00008 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi138g00008 Sebi-Chr138 62135 63924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi138g00008 1 421 C2C2-CO-like Transcription Factor Family AT3G21880 41.435 3.41e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi138g00008 CCT 1.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi138g00008 - - gmx:100804738 640.573