Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi137g00076 ATGGTTGAGAATATGAAGAGAAGCAACTTTGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCGGCACTTGTTGAAAGGATTCTGAAGCCTCTTCATGGAGTCAAAGATGTCTCAGTGATAGTTCCTACCCGAACAGTCACCGTGGTCCATGATGTCCTCCTTACTTCTGAGTCACAAATAGTTAAGATCCAGATCTTACTCAAGATGGGAAAGGGGTCCCAAGATCGTAAATGTGGTATCGTAACACGGATCGGAGAGATCAACGATGGAAAGAAATGGCCAGACTTACCTACAATGGCCTGTGGCTTGTTACTGGCACTGTCTTTCTTGAAGTATATATATCCCCCTTTGGGATGGTTGGCTCTTGGTTCTATTGCCATTGGCTTCCCTAAAATTCTATTCAGGGCAATAGCTTCCATCAGGGCTCTTACTCTTAATATCAACATTCTGGTTCTACTGTCAGTGTGTGGTACTGCTGCTTTACAGGATTTTACAGATGGTGGAGTAATCATCTTCCTGTTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCCTCTTTAACAAACATGGCTCCTCAAAAGGCCATTGTTGCTGAGACTGGAGAACGTGTTGATGTCAATGATGTTAAGATCAACACTATCCTTGCTGTCAAGGCTGGTGATACTATTCCTCTTGATGGAGTTGTTGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTCCCTGTCACCAAAGAGTTAGATTCATTAGTCTGGGCTGGAACTATTAACCTGAATGGATATATAAGTGTAAAAACTACTGTGTTGGCAAAAGACACAGTGGTGGCAAGAATGTCAAAACTTGTAGAAGAGGCTTCTAGCAGAAAATCCCGAGCACAAAGATTCATAGATAAATTTTCAAAGTACTATATTCCTGTGATTGTCTTGATTTCAGCTAGCATTGCTGTGGTACCAGCTGCATTAGGAGTTCCTGATTTTGACCCTTGGTTTCATCTTGCAATTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTTATCCTCTCAACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGTTTGCTACTGAAAGGTGGAGATTATCTTGAAACGCTTTCTGGAATTAAGACAGTGGCTTTTGATAAAACAGGCACAATAACAAGAGGAGAGTTCACTGTATCAGACTTTAGTGCTGCAGATGACATTAGCATTGAAACCTTATTGTACTGGGTTTCAAGTATTGAGAGTAAATCAAGTCATCCAATGGCAGCTGCACTAGTGGAATATGGAAAGTTGCACTCTATAAAACCAGTCCCAGAAAATGTAGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTCTGGCACAATTGATGGGAGGGATATCTATATAGGCAATAGGAGAATTGCTGTCCGAGCTGGCTGTGAAAGTGTCGATTGCCATGTGCAAGTTGAAAGCCATGAGATTTCTACCAAGAAGCAATACTGTGAACCAACTCTAGTTGGAGTCTTCAGCCTAGTTGATAGTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAAGTTATTAGGCGTCAGATCAGCCATGCTGACAGGAGATAGCCCTCAGGTTGCTATGTATGTTCAGAGTCAGTTGAACCATGCTCTGGACATTGTTCATGCAGAGCTTCTTCCTCATGAAAAGGCTATGATTATTGAGAATTTCAAGAAAGATGGGTTAACAGCCATGATTGGAGATGGCATTAATGATGCTCCTGCATTAGCTGCAGCTGACATTGGCATCTCAATGGGAATATCAGGTTCAGCACTTGCTAATGAGACAGGCAATGCAATTCTCATGTCAAATGACATCACAAAAATACCTGAAGCCATTAGGCTAGCAAGAAAAACTACTAGAAAGCTCATTGAGAATGTCATTATTTCAATTGGCTCAAAGAGTGCCATACTGGCATTGGCAATTGCAGGATATCCATTAGTTTGGCTTGCTGTGCTAACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTGCAAGAGAAACCAAAATATGCAAGAAAATCTACAAGGTCTAAATACGGCAACTTCTTGGAAGATAAGACCGTGACTTTACTTGACAAGCAAAGTAATGGTGATGAGAACCAAGGGCTTCTTACTGCTGAAAAGTGTGGTAAAGAGTGCTGTAAAAATGTCACTCATCATGTGGCAACCACAAAAGCAAGCAAACATGAATCTTCTGGACTTTCAAAGTTGAGCTTACTCAAGGGAAATGACCAAGGGAACTTGATCTTTGTGGAAGTTTATATGGTGAAACCTTGCAATGATTTCTGTTTAGACAAAGTCAAGATGTGTGAGGACTCTTCAGGCAGAACAAAGAATAGCTCTGATTGTGGCACTGATTCTGTTATGAAACAAGTTGCCAGCATTGCTACCTCGGAATCTACTGGTTATAAGGACAAATCTATGGATGTCTCAGAGTTGTGTGGGACAAGTGGGATTCCCCAATGCTGCAAGAATGGATGTTGTAATGATAGTGTTAGTGATATCAATAGCCTTAGTCAACCAAACATTATTATTGAGTGA 2646 0.4112 MVENMKRSNFEVLGMCCATEAALVERILKPLHGVKDVSVIVPTRTVTVVHDVLLTSESQIVKIQILLKMGKGSQDRKCGIVTRIGEINDGKKWPDLPTMACGLLLALSFLKYIYPPLGWLALGSIAIGFPKILFRAIASIRALTLNINILVLLSVCGTAALQDFTDGGVIIFLFSIAQWLETRATHKAMVAMSSLTNMAPQKAIVAETGERVDVNDVKINTILAVKAGDTIPLDGVVVEGKCEVDEKMLTGESFPVTKELDSLVWAGTINLNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRAQRFIDKFSKYYIPVIVLISASIAVVPAALGVPDFDPWFHLAIVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSGIKTVAFDKTGTITRGEFTVSDFSAADDISIETLLYWVSSIESKSSHPMAAALVEYGKLHSIKPVPENVENFQNFPGEGISGTIDGRDIYIGNRRIAVRAGCESVDCHVQVESHEISTKKQYCEPTLVGVFSLVDSCRSGALEAIEELKLLGVRSAMLTGDSPQVAMYVQSQLNHALDIVHAELLPHEKAMIIENFKKDGLTAMIGDGINDAPALAAADIGISMGISGSALANETGNAILMSNDITKIPEAIRLARKTTRKLIENVIISIGSKSAILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQEKPKYARKSTRSKYGNFLEDKTVTLLDKQSNGDENQGLLTAEKCGKECCKNVTHHVATTKASKHESSGLSKLSLLKGNDQGNLIFVEVYMVKPCNDFCLDKVKMCEDSSGRTKNSSDCGTDSVMKQVASIATSESTGYKDKSMDVSELCGTSGIPQCCKNGCCNDSVSDINSLSQPNIIIE 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi137g00076 881 Pfam Heavy-metal-associated domain 10 62 IPR006121 GO:0046872
Sebi137g00076 881 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 390 IPR023298 -
Sebi137g00076 881 NCBIfam cadmium family heavy metal-translocating P-type ATPase 147 699 - -
Sebi137g00076 881 SFLD p-type atpase 379 648 IPR044492 -
Sebi137g00076 881 Gene3D - 387 646 IPR023214 -
Sebi137g00076 881 PRINTS Cadmium-transporting ATPase signature 261 277 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi137g00076 881 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi137g00076 881 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi137g00076 881 PRINTS Cadmium-transporting ATPase signature 182 202 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi137g00076 881 PRINTS Cadmium-transporting ATPase signature 280 294 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi137g00076 881 Pfam haloacid dehalogenase-like hydrolase 392 609 - -
Sebi137g00076 881 SUPERFAMILY HMA, heavy metal-associated domain 3 62 IPR036163 GO:0046872
Sebi137g00076 881 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Sebi137g00076 881 CDD P-type_ATPase_HM 102 697 - -
Sebi137g00076 881 PRINTS P-type cation-transporting ATPase superfamily signature 541 551 - -
Sebi137g00076 881 PRINTS P-type cation-transporting ATPase superfamily signature 245 259 - -
Sebi137g00076 881 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Sebi137g00076 881 PRINTS P-type cation-transporting ATPase superfamily signature 519 530 - -
Sebi137g00076 881 PRINTS P-type cation-transporting ATPase superfamily signature 595 614 - -
Sebi137g00076 881 PRINTS P-type cation-transporting ATPase superfamily signature 619 631 - -
Sebi137g00076 881 FunFam Putative cadmium/zinc-transporting ATPase 3 407 527 - -
Sebi137g00076 881 Gene3D - 1 66 - -
Sebi137g00076 881 CDD HMA 10 72 IPR006121 GO:0046872
Sebi137g00076 881 NCBIfam heavy metal translocating P-type ATPase 147 697 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi137g00076 881 Gene3D - 185 299 - -
Sebi137g00076 881 FunFam Copper-transporting ATPase 1, putative 185 299 - -
Sebi137g00076 881 FunFam Putative cadmium/zinc-transporting ATPase 3 2 64 - -
Sebi137g00076 881 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 702 - -
Sebi137g00076 881 SUPERFAMILY HAD-like 394 696 IPR036412 -
Sebi137g00076 881 Gene3D - 407 527 IPR023299 GO:0000166
Sebi137g00076 881 NCBIfam HAD-IC family P-type ATPase 169 676 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi137g00076 881 SUPERFAMILY Calcium ATPase, transduction domain A 209 295 IPR008250 -
Sebi137g00076 881 ProSitePatterns Hypothetical cof family signature 2. 595 617 - -
Sebi137g00076 881 Pfam E1-E2 ATPase 203 374 - -
Sebi137g00076 881 SFLD Haloacid Dehalogenase 379 648 - -
Sebi137g00076 881 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi137g00076 Sebi-Chr137 1485334 1490239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi137g00076 3 850 Primary Pumps ATPases AT4G30110 53.318 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi137g00076 K01534 - gmx:100815324 1335.47