Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi137g00072 ATGACCGGAACATCTGAAAAGGATTTTATGAGGGAGGAGAAAGAGTGCAAGAGGATAACTGAAGTTCAAGAGCTGAAGGACAATCTTCAACGTAGATATAGTGGCTACATTAGTAATCTGAAGCATGAATTTTCCAAAAATAAAAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAAATCTTACTTACATGGTGGAATATTCACCTTAAATGGCCATACCCAACGGATGCGGATAAGGTTGCCCTAGCTGAATGGACTGGCCTGGATCAGAAGCAGGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACGAACGAAATGCAAGCTGCAGTTTTAGATGGTCTCTATGGACCTCTGTACGAATGA 378 0.4021 MTGTSEKDFMREEKECKRITEVQELKDNLQRRYSGYISNLKHEFSKNKKKEKLPKEAKQILLTWWNIHLKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTNEMQAAVLDGLYGPLYE 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi137g00072 125 CDD homeodomain 59 107 IPR001356 GO:0003677
Sebi137g00072 125 ProSiteProfiles ELK domain profile. 24 44 IPR005539 GO:0003677
Sebi137g00072 125 Pfam Homeobox KN domain 64 103 IPR008422 GO:0003677|GO:0006355
Sebi137g00072 125 ProSiteProfiles 'Homeobox' domain profile. 44 107 IPR001356 GO:0003677
Sebi137g00072 125 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Sebi137g00072 125 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 112 - -
Sebi137g00072 125 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Sebi137g00072 125 SMART HOX_1 46 111 IPR001356 GO:0003677
Sebi137g00072 125 SMART ELK_2 24 45 IPR005539 GO:0003677
Sebi137g00072 125 Gene3D - 41 115 - -
Sebi137g00072 125 Pfam ELK domain 24 45 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi137g00072 Sebi-Chr137 1324454 1324963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi137g00072 20 124 Homeobox Transcription Factor Family AT1G23380 61.905 5.51e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi137g00072 Homeobox_KN 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi137g00072 - - ccaj:109811765 203.371