LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi137g00014	ATGAAGGAAAGCAATGATGGGTTCGTGAGGGCTGATCAGATTGATCTAAAGAGCATAGATGAACAGCTTGAGAGGCACCTGAACAAGGCATTGACTATGGATAAGATGAAGCAGAAAGATGAGCATGCAACTGTTGGTGGACCTGCTGCTGCTATCTTCAAGAAGCAAAGAGAAGACTGGGAAATTGACCCTTCCAATCTTATCATCAAGAGTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGTGTCTATGATGGCCAAGATGTTGCTGTCAAAATGCTGGACTGGGGTGAAGAAGGGCACCGGACAGAAGCTGAAATTGCTGCCCTCAGGTCAGCTTTTACACAAGAAGTTGTTGTTTGGCATAAACTTGAACATCCTAATGTCACTAAGTTTATAGGGGCAACAATGGGATCTTCAGAATTACAGATACAAACTGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTGCGCTGAAATCTTACTTAATAAAGAATAGGAGGAGGAAGTTAGCTTTCAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAAATTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGACAAGACACGCACAGTTAAAATTGCTGATTTTGGAGTTGCACGTGTTGAAGCCTCAAATCCCAATGACATGACTGGGGAGACTGGTACACTTGGTTACATGGCTCCTGAGGTTCTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCCGTTGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAGATGCTGGGATGCTAATCCTGATAAACGGCCTGAAATGGATGAGGTAGTTTCCATGCTGGAGGCTATTGACACATCCAAGGGTGGAGGTATGATCCCTGATGATCAGCAGCAAGGTTGTCTTTGCTTTCGTAAGCACAGAGGGCCTTGA	1113	0.4403	MKESNDGFVRADQIDLKSIDEQLERHLNKALTMDKMKQKDEHATVGGPAAAIFKKQREDWEIDPSNLIIKSVIARGTFGTVHRGVYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVVVWHKLEHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPDDQQQGCLCFRKHRGP	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi137g00014	370	Pfam	Protein tyrosine and serine/threonine kinase	69	341	IPR001245	GO:0004672\|GO:0006468
	Sebi137g00014	370	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	208	220	IPR008271	GO:0004672\|GO:0006468
	Sebi137g00014	370	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	58	344	-	-
	Sebi137g00014	370	CDD	STKc_MAP3K-like	73	341	-	-
	Sebi137g00014	370	SUPERFAMILY	Protein kinase-like (PK-like)	54	341	IPR011009	-
	Sebi137g00014	370	SMART	serkin_6	67	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi137g00014	370	FunFam	Serine/threonine-protein kinase HT1	167	352	-	-
	Sebi137g00014	370	Gene3D	Transferase(Phosphotransferase) domain 1	168	359	-	-
	Sebi137g00014	370	Gene3D	Phosphorylase Kinase; domain 1	55	150	-	-
	Sebi137g00014	370	PRINTS	Tyrosine kinase catalytic domain signature	202	220	IPR001245	GO:0004672\|GO:0006468
	Sebi137g00014	370	PRINTS	Tyrosine kinase catalytic domain signature	268	290	IPR001245	GO:0004672\|GO:0006468
	Sebi137g00014	370	PRINTS	Tyrosine kinase catalytic domain signature	312	334	IPR001245	GO:0004672\|GO:0006468
	Sebi137g00014	370	PRINTS	Tyrosine kinase catalytic domain signature	164	177	IPR001245	GO:0004672\|GO:0006468
	Sebi137g00014	370	ProSiteProfiles	Protein kinase domain profile.	67	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi137g00014	370	FunFam	Kinase suppressor of Ras 1	56	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi137g00014	Sebi-Chr137	242152	247365	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi137g00014	1	302	MAP Kinase Kinase Kinase	AT5G50000	80.126	0.0	535

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Sebi137g00014		PK_Tyr_Ser-Thr	1.4e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi137g00014	-		-	gmx:100809898	689.493