Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi137g00012 ATGAAATCCCAAAACGTTGCCACGCAGTTTAGGATTCTCATCCGCGCCGTCGCAACTGCCCTCGAAGCCTTGCCTCTGCACAGCATCGACGTCTGCTTAGAGGTGAAAGAGCTAATTGAATTACTCACCAAGCAAGCCAAAAAGGCCAAGCTCGAACTCCACCCAAACGACGAACGCGAAGCCAAGCGAGTTCGTTCCGTTTTGAATCAGCTCGAAAGAGGAACCGAACCCGACGTGGACGCCATGAAGCGAGTGCTTGATTATCTCGAAATCAAAACTTGGACTGATTGCAACAACGAGATCAAATTCCTCCAAGACGAATCTGAATCAAACGAGCAAGAGGTTCCGTTATTGAGTAGCTTAACAGGATTCATGTGTTACTGTCGAGTAGTCATATTCGAACCTTTCAATTTCCAACCTGAAGCCAGGTGCAGCACAGAGACGCTAAGCTGCGTAACACCGGATGATTTCCGGTGTCCAATTTCCCTAGAGCTTATGACGGATCCAGTAACCGTTTCCACTGGCCATACCTATAACCGAGCCTCAATTCAAAAGTGGTTAAAAGCAGGGAACATGACCTGTCCGAAAACAGGGGAAAGGCTAACAAACACAGAGCTGTTCCCGAACCTAACGCTCAAGAGGCTCATCCAAAGATTCTGTTACGATAACGGAATTTCAATAGCCAAGTCCCGAAGCAGAGCCAGGACGGTAGAGCCTGGTGGTGCGGCAGCAGCACACGCCATGCAGTTCCTGTCCTGGTTTCTCGCTAGGCAGTTGGTGTTTGGAACAGAGGAACAGAAAAACAAGGCTGCTTACGAGGTTCGATTGATTGCAAGGTCCAACGTTTTCAATAGGGCGTGTTTGGCTGAAATGGGTATGGTTCCTCCACTGTTGGATCTTCTCTCCACGGATGATGTAGCCACGCAAGAGAACGCAATCTCTGCTCTTTTGAAGCTCTCAAAGCACACAACCGGCCAGGAAGTTATCATGGAGAGTAGGGGTTTAGCACCGATTATTAAGGTTCTCAAAACAGGGCATAGTCTAGAAGCACGTCAAATCGCGGCTGCTACAATATTCTATCTTTCTTCGGTGAAAGAGTATAGAAAATTAATCGGCGAAAACCCAGAGGCAATTCCGGGTTTAGTGCAGATGATAAGGGAAGGAACAACTTGTGGGAAAAAAAATGCAGTGGTTGCAATTTTCGGGTTGCTCTTGCTTCGTAAGAATCGCCCCAAGGTGCTTGATGCTGGTGCTGTTCCTGTGCTTGTTGGGGTTTTAGCTTCTTCTTCGGATAAAGCTGATCTTGTCACTGATTGTTTAGCTGTTCTTGTAGCTTTAGCAGAGAGCGTGGAGGGAGCTCGTGCTATATTACAAGCCTCTGCTTTGAATTTGGTCATTGGGGTTTTGCAATCTGGAACGTCGCGCTCAGGGAAGGAATACTGTGTTTCAATTTTGCTGTCACTGTGTGACAAAATTGGTGCAGAGGTGATAAGTGTTCTGGTCAAGGATCCTTTACTTATGCCTTTGCTTTATTCACTTGTTACGGATGGTACTCCTCTTGCGGCCAAGAAAGCACGCTCCCTCATCAATGTCTTACAAGAATTCAACGAGAAAAGGATTTCGGGATTGGTGGGTTCGTCTGTTTCACAGCAAAGATTAGTTCACTTATCTTGA 1674 0.4689 MKSQNVATQFRILIRAVATALEALPLHSIDVCLEVKELIELLTKQAKKAKLELHPNDEREAKRVRSVLNQLERGTEPDVDAMKRVLDYLEIKTWTDCNNEIKFLQDESESNEQEVPLLSSLTGFMCYCRVVIFEPFNFQPEARCSTETLSCVTPDDFRCPISLELMTDPVTVSTGHTYNRASIQKWLKAGNMTCPKTGERLTNTELFPNLTLKRLIQRFCYDNGISIAKSRSRARTVEPGGAAAAHAMQFLSWFLARQLVFGTEEQKNKAAYEVRLIARSNVFNRACLAEMGMVPPLLDLLSTDDVATQENAISALLKLSKHTTGQEVIMESRGLAPIIKVLKTGHSLEARQIAAATIFYLSSVKEYRKLIGENPEAIPGLVQMIREGTTCGKKNAVVAIFGLLLLRKNRPKVLDAGAVPVLVGVLASSSDKADLVTDCLAVLVALAESVEGARAILQASALNLVIGVLQSGTSRSGKEYCVSILLSLCDKIGAEVISVLVKDPLLMPLLYSLVTDGTPLAAKKARSLINVLQEFNEKRISGLVGSSVSQQRLVHLS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi137g00012 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Sebi137g00012 557 SUPERFAMILY ARM repeat 259 533 IPR016024 -
Sebi137g00012 557 Pfam U-box domain 154 223 IPR003613 GO:0004842|GO:0016567
Sebi137g00012 557 SMART arm_5 322 363 IPR000225 GO:0005515
Sebi137g00012 557 SMART arm_5 281 321 IPR000225 GO:0005515
Sebi137g00012 557 SMART arm_5 406 448 IPR000225 GO:0005515
Sebi137g00012 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 461 IPR000225 GO:0005515
Sebi137g00012 557 PANTHER U BOX DOMAIN-CONTAINING 4 532 - -
Sebi137g00012 557 FunFam RING-type E3 ubiquitin transferase 153 225 - -
Sebi137g00012 557 Coils Coil 32 52 - -
Sebi137g00012 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 226 IPR013083 -
Sebi137g00012 557 SUPERFAMILY RING/U-box 148 226 - -
Sebi137g00012 557 ProSiteProfiles U-box domain profile. 152 226 IPR003613 GO:0004842|GO:0016567
Sebi137g00012 557 SMART Ubox_2 156 219 IPR003613 GO:0004842|GO:0016567
Sebi137g00012 557 Pfam Armadillo/beta-catenin-like repeat 284 320 IPR000225 GO:0005515
Sebi137g00012 557 FunFam RING-type E3 ubiquitin transferase 229 543 - -
Sebi137g00012 557 CDD RING-Ubox_PUB 154 206 IPR045210 -
Sebi137g00012 557 Gene3D - 227 542 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi137g00012 Sebi-Chr137 212536 214209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi137g00012 1 555 U-box Gene Family AT1G10560 38.687 3.71e-140 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi137g00012 - - gmx:100810963 726.857