Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi137g00004 ATGGTGGCAAGATCATACATCAATTTGTTGGACTTGGTGTCAGGGGATATTTTAAATTTCCCTCAAACTCCAAGAGCTCTTCCGCGAGCCATGACTGTTCCAGGAGTTATGTCTGATTTAGATGGTAAACAAAGCAATGATGATGATTCAAATACTGTCTCATCAGAACAGCGCCGCAAGATGATTATAGTAGCAAATTTTCTTCCTCTCAATGCTAAAAAGGATGACATATCTGGCAGATGGTGCTTTAGTTATGATGAAGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTGCTGATACAGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGACAAAGTTTCTGTTCAGTTGCTGGAGGAATTCAATTGCTTGCCTACTTTTATTCCTTCAGACATCCAGGAACTGTTCTATAATGGATTCTGCAAGCAATATTTGTGGCCTCTATTCCATTACATGCTGCCCATGTATCCAGGCTATTGCAATCGCTTTGATAGGTCACTGTGGCAGGCTTATGTGTCTGCTAACAAGATATTTGCAGATAGAGTCATGGAGGTCATTAATCCCGAAGATGATTTTGTATGGGTGCATGATTATCATCTCATGGTTCTTCCAACATTTCTGCGGAAGAGGTATAGTCGTGTCAAACTAGGCTTTTTCCTCCACAGTCCATTTCCTTCTTCAGAAATTTATCGAACTCTACCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATACAGATTTAATTGGCTTTCACACATTTGATTATGCTCGTCATTTTCTGTCCTGCTGCAGTCGAATGCTTGGCTTGGAGTATGAATCAAAAAGGGGTTACATTGGGCTTGAATACTTTGGCCGTACAATATTCATTAAAATATTGCCTGCTGGGATTCATATGGGTCGCATTCAGTCTGCCTTAAATCACCCTTCTACTTCTACCATAATTAGAGAAATCTATGATCAGTATGAGGGGAAAAAACTTATCATTGGTGTTGATGATATGGACATATTCAAAGGTGTAAGTTTAAAGTTCTTTGCTATAGAACAACTCCTGCAGCAATGTCCACAATTACAGGGTGAATTGGTGCTGGTCCAAATTTTAAATCCCCCAATGAGTAGTGGCAAAGAAGTCGAGGAAGCAAAGGAGGAGGCCTACATCACTGCTAAAAGGATAAACGAAAGGTTTGGTTTTCCAGGTTATGAACCTGTGGTCATCATTGATCGTCATGTTTCTTTCTATGAGAAGACAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGTTGTTCACCATCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGATATTAATGCTGTAGCTGAAGCACTAAAGTTGGCTATCTCAATGCACAATAGAGAGAAACAGTTCCGGCATGAGAAGCACTACCGATATGTTAGTTCTCATGATGTGGCTTACTGGGCCCAACGTTTTGAACAAGATCTTGAGTTCTCATGCAGGGATCACTATAGGAAACGTTGCTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTTTGTCCCTCTCTCCTAATTTCAGGAAGCTATCCATAGACCACATTGCCTCTGCATATAAAAGGACAACTTCCAGAGCAATCTTTTTGGATTATGATGGTACAATTGTACCTCAAACTTCCATTGTTAAATCCCCCAGTCCTGAAGTCACGTCCGTGCTAAATAATCTCTGCAGTGATCTTAACAACACTGTGTTTATTGTTAGCGGCAGGGGGAAAACTTCATTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCATGAGGTGGGGGAAACAATCAAGTTGGAAAATGAGTCATATAAGCACAAATTTTGCATGGAAAAGCATTGCGGAACCAGTCATGAGATCATATACTGAGGCGACAGATGGCTCCTATATAGAGACCAAAGAAAGTGCCTTGGTATGGCATTATTACAATGCCGACCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAGCCTGTAGTTGTTAAAAAGGGACAGCACATTGTTGAAGTCATGCTTCAGGGGGTTACTAAAGGGTCAGTTGCACAGGAAGTTCTGTCTACACTAACCAGTAATGGCAAATCGCCAGATTTTGTGCTGTGCATTGGGGATGATAGATCTGATGAGGATATGTTTGAGAGCATATTAACCAAACCTTATAGTGCAACTTCCTCTTCAGCACCAGAAATCTTTGCATGTACTGTTGGACAGAAACCAAGCAAAGCTAGATACTACCTAGATGATACTGTGGACGTGATGATGTTACTTGAGGGTCTTGTTACCGCGTCAGGGTCTAAATCAAAAGGTTCTACAGATGCCCCTTCTGAAAAAACAGAATTCTGTTTTGAAAATATTGCTTGA 2478 0.4108 MVARSYINLLDLVSGDILNFPQTPRALPRAMTVPGVMSDLDGKQSNDDDSNTVSSEQRRKMIIVANFLPLNAKKDDISGRWCFSYDEDSIFWQLKDGLSADTDVVYVGSLKVDVDASEQDKVSVQLLEEFNCLPTFIPSDIQELFYNGFCKQYLWPLFHYMLPMYPGYCNRFDRSLWQAYVSANKIFADRVMEVINPEDDFVWVHDYHLMVLPTFLRKRYSRVKLGFFLHSPFPSSEIYRTLPVRGEILKALLNTDLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYFGRTIFIKILPAGIHMGRIQSALNHPSTSTIIREIYDQYEGKKLIIGVDDMDIFKGVSLKFFAIEQLLQQCPQLQGELVLVQILNPPMSSGKEVEEAKEEAYITAKRINERFGFPGYEPVVIIDRHVSFYEKTAYYALAECCIVNAVRDGCSPSLSGAIRVNPWDINAVAEALKLAISMHNREKQFRHEKHYRYVSSHDVAYWAQRFEQDLEFSCRDHYRKRCWGIGFGLNFRILSLSPNFRKLSIDHIASAYKRTTSRAIFLDYDGTIVPQTSIVKSPSPEVTSVLNNLCSDLNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFMRWGKQSSWKMSHISTNFAWKSIAEPVMRSYTEATDGSYIETKESALVWHYYNADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIVEVMLQGVTKGSVAQEVLSTLTSNGKSPDFVLCIGDDRSDEDMFESILTKPYSATSSSAPEIFACTVGQKPSKARYYLDDTVDVMMLLEGLVTASGSKSKGSTDAPSEKTEFCFENIA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi137g00004 825 Pfam Trehalose-phosphatase 554 787 IPR003337 GO:0003824|GO:0005992
Sebi137g00004 825 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 442 IPR001830 GO:0003824|GO:0005992
Sebi137g00004 825 NCBIfam HAD-IIB family hydrolase 552 753 IPR006379 -
Sebi137g00004 825 FunFam Trehalose-6-phosphate synthase 2 634 713 - -
Sebi137g00004 825 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Sebi137g00004 825 Gene3D Glycogen Phosphorylase B; 51 312 - -
Sebi137g00004 825 SUPERFAMILY HAD-like 551 799 IPR036412 -
Sebi137g00004 825 Gene3D - 633 713 - -
Sebi137g00004 825 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 550 667 - -
Sebi137g00004 825 CDD HAD_TPP 552 793 - -
Sebi137g00004 825 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 504 - -
Sebi137g00004 825 Pfam Glycosyltransferase family 20 60 443 IPR001830 GO:0003824|GO:0005992
Sebi137g00004 825 Gene3D Glycogen Phosphorylase B; 313 442 - -
Sebi137g00004 825 Gene3D Glycogen Phosphorylase B; 443 488 - -
Sebi137g00004 825 Gene3D - 553 785 IPR023214 -
Sebi137g00004 825 NCBIfam trehalose-phosphatase 551 799 IPR003337 GO:0003824|GO:0005992
Sebi137g00004 825 CDD GT20_TPS 60 504 IPR001830 GO:0003824|GO:0005992
Sebi137g00004 825 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 680 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi137g00004 Sebi-Chr137 33334 36340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi137g00004 1 824 Trehalose Biosynthesis Gene Families AT1G23870 63.395 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi137g00004 K16055 - gmx:100812031 1388.24