Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi136g00035 ATGAAGAACATGAAACAAAACTTTTGCACCTTGGGAGAAGCAACCGCCTCCCAGGTGCAAGGGGGCAAATGCCATGGATCCAACCCAGAAAAGACGCCGTTAGAAAAGTCATGGAGCCAATCCAGAAAAGATGCCCTCATAAGAGAAATGAAGAATGGGGCAACCCCAATAGAGGACTCACGAAAGGGACGTGGCCTTGCAAGCGCTGAACAGGGAAGCAGTCTACACAGCAGACAACGAGCCAGGCAGAGCGCAGAGAGAATAGCACGCTTGTTAGCGCGGCAGAATTGTCAGCGCAGTGGAGCAGAAGACCTGCCAGCGCAGTGCAGCAGCAGAGTTGTCAGCGCAGTGCAACAATACCAGTGCTACAATCTTTCACATAAAAGAAAAAACATCTTCTCTCCCTTAGAGAAAGGACTTGCTGGGCATGCACCAAAAAGGAAAAGAGTCGTTGAAGGCTTAAGCAAAAGACAAAAGGCCTTAGCGATGTCCTCACGAACCACCGCGACGGAGGCGCCGGAGCCTCACGCGCCGCTCCTCCGCTCGCGCCACGACGGCGGGGGTCGGGCTCCTGCCCTTGCGCTCCTGCTCGGACGCGCCGCTGGCCGCCGCGCCCCGTCGATGCTGGTGCGTGAGACGGCGGCGCGTGAGCTCGAGGAGCGGCGCGCCGACTGGGGATACTCGAAGCCTGTGGTGGCGCTCGACATGTCGTGGAATATGGCCTTCGTGGTGGTCTCGGTGGCGATGCTGGCGTGCACCATCGACGAGCGCCCGAACACACCGATCCGGGTCTGGATCGTCGGCTACGCGCTGCAGTGCCTTGTGCACGTGGTGCTGGTGTGGCTCGAGTATCGGCGACGGTACCGGAGGGATTTGCGGCGGCGGAGGGAGAGCGAGACCGGAAGTGCAGACGGAAGCGACAGCGACGACGGCGACGGGAACTCGTCTCGGTCCGGATTCACTAAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCCCCGCGATTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTTTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTAGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTACCAAAATACAGATTTCAAATATTAAGCAATCCGGAAAAGGCTAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACTACCAGTTGTTACTTGGCAAATGAAAGAATACTTTTACCTGAGGATGCGGATGGAGTAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAG 1500 0.5353 MKNMKQNFCTLGEATASQVQGGKCHGSNPEKTPLEKSWSQSRKDALIREMKNGATPIEDSRKGRGLASAEQGSSLHSRQRARQSAERIARLLARQNCQRSGAEDLPAQCSSRVVSAVQQYQCYNLSHKRKNIFSPLEKGLAGHAPKRKRVVEGLSKRQKALAMSSRTTATEAPEPHAPLLRSRHDGGGRAPALALLLGRAAGRRAPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSVAMLACTIDERPNTPIRVWIVGYALQCLVHVVLVWLEYRRRYRRDLRRRRESETGSADGSDSDDGDGNSSRSGFTKRCESINTGVSFLWWMVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQILSNPEKASGGAGSMVPIETTSCYLANERILLPEDADGVELHALPCNHHFHASCIVKWLKMNATCPLCKYNILKGNEQV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi136g00035 499 ProSiteProfiles Zinc finger RING-type profile. 443 489 IPR001841 -
Sebi136g00035 499 MobiDBLite consensus disorder prediction 299 319 - -
Sebi136g00035 499 Pfam RING-H2 zinc finger domain 463 489 IPR024766 GO:0008270
Sebi136g00035 499 MobiDBLite consensus disorder prediction 36 58 - -
Sebi136g00035 499 SUPERFAMILY RING/U-box 457 493 - -
Sebi136g00035 499 PANTHER TARGET OF ERK KINASE MPK-1 200 497 - -
Sebi136g00035 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 497 IPR013083 -
Sebi136g00035 499 SMART ring_2 443 488 IPR001841 -
Sebi136g00035 499 MobiDBLite consensus disorder prediction 162 186 - -
Sebi136g00035 499 MobiDBLite consensus disorder prediction 17 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi136g00035 Sebi-Chr136 631808 638463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi136g00035 168 498 C3H Transcription Factor Family AT1G68070 66.570 6.65e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi136g00035 - K13148 aip:107643865 496.893