Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi136g00020 ATGGATCACCGGAACCACAAGACTCATCAAAAACTCCATCTGCTGCGGCAGATTCACCACGGCAACCGGGAGAGGGATGAGGTGGAAGCTCAGGATCCAACTGCCGCACGAAAAGTTCAGAAGGCGGACCGCGAGAAACTCAGGAGGGATCGACTCAATGACCATTTTCACGAGCTGGGAAACGCGTTAGATCCTGATAGACCAAGGAATGACAAGGCAACTATTCTTACTGATGCAATCCAAATGCTAAAGGACTTCACTACAGAAGTTAATAAGCTGAAAATGGAGCATAAAGCACTTTCTGAAGAGTCTCGTGAACTAATGCAAGAAAAGAATGAACTCCGAGAAGAGAAGGCATCGTTAAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGACTGCAGTTGAACCATTCTGTTGTCATGAGTCACCTTATTCATATCCAGTTCCTATACCCATCCCTCCCAGTCCAATTTCCATGCACCCATCTCTTCAACCCTTTCCTTTCTTTGGAAATCAAAATCCTGGTCACATTCCTAGTCCCTGTTCAATGTATGTCTCATTCTCAGCTCCAACTAACCCTGCAATTGAGCTGCCATCATCTCAGTATGCTTCTACGTCTCACGCGTCTAACCAGAAAGAGTCCCAAAGCAAGTCACCAGATCATAGAAGAAGGCCTAGTGATGCTGAAAGATGTAGTGATTCTCACGATGTAGCTACAGAGCTTGAACTTAGATGCCTGGATCATCAGCACAACAGGAAGTACAAGCATTCAGCAATGAAGGATAGAATCATCACAGATGGGAGTGCTTCAAGCCGGTATTCATCACCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACACTAACATCCCAAAGGTTGATAATTGA 924 0.4502 MDHRNHKTHQKLHLLRQIHHGNRERDEVEAQDPTAARKVQKADREKLRRDRLNDHFHELGNALDPDRPRNDKATILTDAIQMLKDFTTEVNKLKMEHKALSEESRELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAVEPFCCHESPYSYPVPIPIPPSPISMHPSLQPFPFFGNQNPGHIPSPCSMYVSFSAPTNPAIELPSSQYASTSHASNQKESQSKSPDHRRRPSDAERCSDSHDVATELELRCLDHQHNRKYKHSAMKDRIITDGSASSRYSSPQGLQDSSNSVGDTNIPKVDN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi136g00020 307 MobiDBLite consensus disorder prediction 207 246 - -
Sebi136g00020 307 SMART finulus 42 92 IPR011598 GO:0046983
Sebi136g00020 307 MobiDBLite consensus disorder prediction 1 52 - -
Sebi136g00020 307 PANTHER TRANSCRIPTION FACTOR BHLH121 11 298 IPR044579 GO:0003700|GO:0006879
Sebi136g00020 307 MobiDBLite consensus disorder prediction 207 224 - -
Sebi136g00020 307 CDD bHLH_AtILR3_like 41 115 - -
Sebi136g00020 307 MobiDBLite consensus disorder prediction 278 307 - -
Sebi136g00020 307 MobiDBLite consensus disorder prediction 225 246 - -
Sebi136g00020 307 MobiDBLite consensus disorder prediction 258 307 - -
Sebi136g00020 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 106 IPR036638 GO:0046983
Sebi136g00020 307 Pfam Helix-loop-helix DNA-binding domain 37 85 IPR011598 GO:0046983
Sebi136g00020 307 Coils Coil 76 131 - -
Sebi136g00020 307 MobiDBLite consensus disorder prediction 258 273 - -
Sebi136g00020 307 MobiDBLite consensus disorder prediction 17 52 - -
Sebi136g00020 307 Gene3D - 34 114 IPR036638 GO:0046983
Sebi136g00020 307 MobiDBLite consensus disorder prediction 1 16 - -
Sebi136g00020 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi136g00020 Sebi-Chr136 354403 357667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi136g00020 34 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 53.097 1.80e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi136g00020 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi136g00020 - - gmx:100818281 375.555