Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi136g00013 ATGGCGGTGCTCGGTGGTGGAGGTCACTGCGACGGAGGCAGTATCCGTGAGCGACATCTATACAGACACGCTGCAACAGGGAGGCGCAGGCGCTACGCAATTGGGGGACATGGTTGGTCTCATTCTCCTCCTCCACCCCTTTTTACTAAGGGCTCCTTAAATAATGGGAGAAGCCTGATCACAGAGGCAGATCGTGTAGAATCTGTCTGTGCTGGACCATCATCCCGTCTCCAAGAATACAAATCCGAAAATGCGCAGTTGGAGGAAATTCTCACTGCAGAGAGAGAGTTGAGTAAATCATATGAGCCTAGCATAAAACAACTACAGAAGAATTTGTCTAAAAGTAAAAGGGAAGTTTCAAGGGTTGAATCAAATATGGCTGAGGCCTTGGCGGCTAAAAATGTTGAAATTGAGGCACTTCTAAGTTCTATGGATGCAGTTAAGAGGCAGGCTGCATTGTCAGAAGGAAATCTAGCTTCCATGCAGGTGTCTGTGTCTATTTGCATGCAATGCAAACATGGAGTTTATGATGAGAAATCAAGAACTAACAGAGACAAGGATGGTGCAGAAGCGCAGAGAGGGAGAGTTCAAGGCTCAGCCAAGATGGGAATATCTAGAGATTCCATGCACAAAAGGCGTGCCACTGGTGGCAAGAAGAAGGCATGGAGAAAGAAGAGAAAAGGAATTTACTTCTTCTCCCGTTGCAACTATCGATCCCACTGCAGAGGCATCCGATTCTTCTCTGTCTCCGATTGCTCCGTCCTTTGCTCCTCTGGTTTCATTTTCAAGCCACAATACTCTTCTGTGCCTTCGATTGCAGCATCGTCTTCTTCGGTAATTTCAACTGCTTCTACTTTTGACCTGTTCTTTGTTCCTGAAACTCGCAAAGATTGTATCACAAAATTGGAATGGAAACCATCTGCGGATCCTTTCAATTTTGGGAACTTCCGATCTATGGATCTTTCCAAATCAATAATTCCTATGTTGCTCGAGAAACCTTTGTTCAAGATTTCCGATACAGATGAAGAGAACAGAAAGGATGAGGAGGGCGGAGCACGAATTCGGTTCCTGAAAGATTGCAAGCGTTTCGAAGATTGTGCTCTTCAGCGCAATATGAGCCTAAGACGCAAAGGAAATACTGCAACTCTTCCCAAAGTTAGAGTCCAGAATTTTCCTGACTATGTTCCAGATTCCAAGATTTACAAAGTGGAAGCAATTCTCAGGCCCTGGCGATTTGGTTTGGACTCTGATGTTTACCTTGGTAACAATATGATCAATTTTTATGGTAATGATTTGATCAATTTTTATGGCTATTGCAAGAAAATTCTAGATGCTCAGAAGGTGTTTGATAAAATGCCTCAGAGAACCATTATTTTTTGGAACTCTAGTATAATTGCTTGTGTTGAGAATCTTTGCTTACGTGATGGAATTCGGTATTTCTTTAAGATAATGGGTTATGTTTTTGAGCCAAATGAACTCTTCCGCAGCTATATGCACCAGGATGCACATGAATTCTTGAACCTTTTGCTGAATAAACTTGTTGACATTCTGGAGAAAGAGGCTCAAGCTGCAAATTGGCTGAGGAATGGTCATGCTAATGGTGCTCAGAAAGAGCCTTTAGTTACTTGGGTACATAAAATTTTTCAGGGAATACTCACCAACGAGACAAGTTCGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCGCCTCACATCTTGGTCATCCATCTTCAGCGTTTTAAATACATGGAACAGCTGGGCCGCTACAAGAAGTTGTCTTACAGGGTTGTGCGTTTTAAATACATGGAACAGTTGGGCCGCTACAAGAAGTTGTCCTACAGGGTTGTTTTCCCCCATGGAGCAGCAGATGCTGAGGAATATATTGTTAATACCACTCTATATGATATGATCTTTATTGATGCTTATGACTGTGATGGTGTGGCTTTATGGGATGTTTCAATATCTTTTGTACTCTTGAAGAAATTATTTCATCTTTTTCCCTTCAATCCAGTGCATCATCTTTCAGAAAAGGATAATCAAGAGCTGATCGTTTCTTTGTTGATGGCTTGTGTTTTGCTGCGGCTCCTTATTGGTGGTTTAATTCCTTTCATTTTGAATTACAATTGTGGTGATGATACTGCTACTGTTAATGATGGGACTTATATAGGCTTTATGGCTTTTATGTCACTTGGTACCATTTTGTCTTTGACTATTTTGCCAACTAGTAAGGTTGTTCGTGATGATGGGACAAGGTATGAGCTTGGTCGCCAGCCAGCAAACACCAAGTTATCAAGCAACAAGACAGTTAGGAGGATTCGTGTTAGGGGTGGCAATGTGAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCATGGGGTAGTGAAGCTGTTACTCGCAAGACTCGTATTCTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAAACTCTGGTCAAGAGTGCTATTGTCCAGGTTGATGCCGCTCCATTCAAACAGTGGTACCTTCATCACTATGGTGTTGATATTGGTAGAAAAAAGAAAGCGGCATCCAAGGACTCTACAGAGGAGGGTGGTGAAGCTGCTGCTGAAGAAACTAAGAAAAGTAATCATGTTCAGAGAAAACTTGAGAAGCGCCAGAAAGATCGTAAGCTTGATCCTCACATTGAAGAGCAGTTTGGTGGTGGTCGATTGCTGGCCTGTATTTCTTCTCGCCCTGGTCAATGTGGTCGGGCTGATGGGTACATTCTGGAAGGTAAGGAACTGGAATTTTACATGAAGAAATTACAGAAGAAGAAGGGAAAGGGTGCTGCTTAA 2832 0.4262 MAVLGGGGHCDGGSIRERHLYRHAATGRRRRYAIGGHGWSHSPPPPLFTKGSLNNGRSLITEADRVESVCAGPSSRLQEYKSENAQLEEILTAERELSKSYEPSIKQLQKNLSKSKREVSRVESNMAEALAAKNVEIEALLSSMDAVKRQAALSEGNLASMQVSVSICMQCKHGVYDEKSRTNRDKDGAEAQRGRVQGSAKMGISRDSMHKRRATGGKKKAWRKKRKGIYFFSRCNYRSHCRGIRFFSVSDCSVLCSSGFIFKPQYSSVPSIAASSSSVISTASTFDLFFVPETRKDCITKLEWKPSADPFNFGNFRSMDLSKSIIPMLLEKPLFKISDTDEENRKDEEGGARIRFLKDCKRFEDCALQRNMSLRRKGNTATLPKVRVQNFPDYVPDSKIYKVEAILRPWRFGLDSDVYLGNNMINFYGNDLINFYGYCKKILDAQKVFDKMPQRTIIFWNSSIIACVENLCLRDGIRYFFKIMGYVFEPNELFRSYMHQDAHEFLNLLLNKLVDILEKEAQAANWLRNGHANGAQKEPLVTWVHKIFQGILTNETSSQEAQKRMKIKKPPHILVIHLQRFKYMEQLGRYKKLSYRVVRFKYMEQLGRYKKLSYRVVFPHGAADAEEYIVNTTLYDMIFIDAYDCDGVALWDVSISFVLLKKLFHLFPFNPVHHLSEKDNQELIVSLLMACVLLRLLIGGLIPFILNYNCGDDTATVNDGTYIGFMAFMSLGTILSLTILPTSKVVRDDGTRYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLHHYGVDIGRKKKAASKDSTEEGGEAAAEETKKSNHVQRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi136g00013 943 Coils Coil 77 97 - -
Sebi136g00013 943 Gene3D Ribosomal protein S8e, subdomain 834 901 IPR042563 -
Sebi136g00013 943 MobiDBLite consensus disorder prediction 179 218 - -
Sebi136g00013 943 FunFam 40S ribosomal protein S8 835 901 - -
Sebi136g00013 943 Gene3D - 754 938 - -
Sebi136g00013 943 FunFam 40S ribosomal protein S8 758 886 - -
Sebi136g00013 943 Pfam Ribosomal protein S8e 752 922 IPR022309 -
Sebi136g00013 943 Gene3D Cysteine proteinases 473 556 - -
Sebi136g00013 943 MobiDBLite consensus disorder prediction 851 893 - -
Sebi136g00013 943 NCBIfam ribosomal protein eS8 751 924 IPR001047 GO:0003735|GO:0005840|GO:0006412
Sebi136g00013 943 Gene3D Cysteine proteinases 557 640 - -
Sebi136g00013 943 PANTHER 40S RIBOSOMAL PROTEIN S8 751 940 IPR001047 GO:0003735|GO:0005840|GO:0006412
Sebi136g00013 943 FunFam 40S ribosomal protein S8 887 940 - -
Sebi136g00013 943 CDD Ribosomal_S8e_like 744 922 - -
Sebi136g00013 943 Coils Coil 105 132 - -
Sebi136g00013 943 Pfam Ubiquitin carboxyl-terminal hydrolase 491 597 IPR001394 GO:0004843|GO:0016579
Sebi136g00013 943 SUPERFAMILY Cysteine proteinases 481 597 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi136g00013 Sebi-Chr136 260975 270037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi136g00013 752 931 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.530 3.15e-99 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi136g00013 K02995 - pcin:129288318 338.191