Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi135g00056 ATGGCACCACCAACAAAAGGAAACAACAACGAAGAAGAAAAGCAATTGGTGAACAAGTCTGAAGCCAAAACATTAGTGCAGGTGCAGAAGCAGAGTAATAAGAATAACAAGAAGGAAAGGTCATCATATGTAGGAGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACCACAAGGAACAGCACTAGGGTGTGGCTAGGAACCTTTGACACTGTAGAGGCTGTTGCTTTAGCTTATGACCAAGCTGCTTTTTCCATGAGAGGCCCATAA 282 0.4397 MAPPTKGNNNEEEKQLVNKSEAKTLVQVQKQSNKNNKKERSSYVGVRKRPWGKFAAEIRDTTRNSTRVWLGTFDTVEAVALAYDQAAFSMRGP 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi135g00056 93 Gene3D AP2/ERF domain 42 93 IPR036955 GO:0003700|GO:0006355
Sebi135g00056 93 ProSiteProfiles AP2/ERF domain profile. 42 93 IPR001471 GO:0003700|GO:0006355
Sebi135g00056 93 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Sebi135g00056 93 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Sebi135g00056 93 SUPERFAMILY DNA-binding domain 41 92 IPR016177 GO:0003677
Sebi135g00056 93 MobiDBLite consensus disorder prediction 1 22 - -
Sebi135g00056 93 PANTHER DNA-BINDING DOMAIN 19 93 IPR044808 GO:0003700|GO:0009873
Sebi135g00056 93 SMART rav1_2 42 93 IPR001471 GO:0003700|GO:0006355
Sebi135g00056 93 CDD AP2 41 93 IPR001471 GO:0003700|GO:0006355
Sebi135g00056 93 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi135g00056 Sebi-Chr135 1791370 1791651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi135g00056 4 92 AP2-EREBP Transcription Factor Family AT3G23240 52.632 1.05e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi135g00056 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi135g00056 K14516 - gmx:100782036 120.168