Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi135g00044 ATGCTCTCCAAAGAGATTCAGGAAGCAGGTTTCGGAATTGAACCCGATGAATTAGCATCCATTGCTCGATCCCATGACACCAAATGTTTAGAACGTCACGATAAAGTTGAAGGATTAGCAAGAGCTGTCCGTGTGTCTTTGCAAGATGGCATTAGTTCACACGATGTACAACATAGACAAAATATCTATGGTTGTAACCGCCTTGCAGAGAAGCCCTCTAGAAGTTTCTGGATGTTCGTTTGGGATGCAATGCAAGACTTAACTCTAATTATCCTTATGGCATGTTCTGTGGTTTCAGTAGGTGTTGGAATCTCAACTGAAGGTTTTCCAAAAGGAGATATAGTCTATCTGTCTATTGGAGATGTAGTTCCTGCAGATGGGTTATTCATATCAGGTTTTAGCTTATTAATTGATGAATCAAGTCTATCTGGTGAGAGTGAGGCTGTGAATGTTGACCAACAGAAGCCTTTTCTTCTAGCTGGGACCACAGTGCAAGATGGGTCTGCTAAGATGCTAGTGACTGCTGTTGGTATGAGGACTGAATGGGGAAGATTGATGGAAACTCTGAATGAAGGGGGAGATGATGAGACACCTCTTCAGTCCATATTCCAGAATACTGGCTCAGAGATAGTCAAAGGGAGAGATGGAAAGAACAAGGTCATGGGTACTCCAACAGAGTCAGCATTGCTGGAATTTGGTTTGCTTTTGGGAGGTTATTCTGATTCCAAGTTCTATAATGACAAGTATAAGGTAATAAAGGTTGAACCTTTCAATTCAGTCAGAAAAAAGATGTCAGTGCTTGTGGCTCTTCCTGATAACAAGTCTCGAGCATTTTGTAAAGGAGCATCAGAAATAGTTTTGAAAATGTGTGACAAAGTTGTTAATGCAGATGGCAAAGTAGTCCTTTTGAACGAACAGCAAAGAAATAGCATCACAGAAGTTATCAATGGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCTTAGCCTTCAAGGATATTGAAGGATCCTCTGATGGTACTACTATTCCTGAGGAGAAGTACACGTTAATAGCTATTATTGGAATCAAGGATCCAGTGAGACCTGGAGTTAAAGAAGCTGTTAAGACTTGTTTAGAAGCTGGGATTACCGTTAGAATGGTAACAGGTGACAACATAAATACTGCTAAAGCGATTGCTAGAGAATGTGGCATCTTGACAGATGGATTGGCGATAGAGGGACCAGAATTCCGGAAAAAGACCCAGCGAGAAATGGAAGAGATAATACCAAAAATACAGGTAATGGCTCGATCCTTGCCTCTTGACAAGCACACCTTAGTGACCCATTTGAGGAATGACTTTAATGAAGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCCCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCTGGGACTGAGGTTGCAAAGGAGAATGCGGATGTGATTGTAATGGATGATAACTTCACCACCATAGTGAATGTTACCAGATGGGGCCGTTCAGTTTATATTAATATACAGAAATTTGTCCAGTTCCAATTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTTGTTTCAGCTTGCGTGTCAGGCTCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTTGGCGCATTGGCATTGGCTACAGAACCTCCCCATGATGGACTGATGAAGAGGCCACCTATTGGAAGGAATGCCAAATTCATCACCAGGGTCATGTGGAGGAACATAATTGGTCAGAGTATCTATCAAATTTTTATCCTTTTAGTCCTCAAATTTCGCGGGAAACAGATTCTCAAGCTCAATGGACCTGATGCCACCTCTGTTCTGAATACTGTCATATTCAACACCTTTGGTTTTGCCAGGCATGTTCAAGAGCTGGGTTTTCCTAATGGTAATGTTCTCAACGGTATGCTTTCAAGTGATAATAGTAGATATTTGGGTGCTTTTGCTCAAACAGTGCCACTGAGCCGGGAGTTGTGGTTAGCCAGCGTCATGATTGGTGCGGTAAGTTTACTCGTAGCTGTTGTCTTGAAGTGCATTCCAGTTCCTACGAGTCATTACGTAGCAACCCATCATGATGGTTACGAGCAGCTCCCCACTGGACCTGACCTGGCATGA 2160 0.4259 MLSKEIQEAGFGIEPDELASIARSHDTKCLERHDKVEGLARAVRVSLQDGISSHDVQHRQNIYGCNRLAEKPSRSFWMFVWDAMQDLTLIILMACSVVSVGVGISTEGFPKGDIVYLSIGDVVPADGLFISGFSLLIDESSLSGESEAVNVDQQKPFLLAGTTVQDGSAKMLVTAVGMRTEWGRLMETLNEGGDDETPLQSIFQNTGSEIVKGRDGKNKVMGTPTESALLEFGLLLGGYSDSKFYNDKYKVIKVEPFNSVRKKMSVLVALPDNKSRAFCKGASEIVLKMCDKVVNADGKVVLLNEQQRNSITEVINGFASEALRTLCLAFKDIEGSSDGTTIPEEKYTLIAIIGIKDPVRPGVKEAVKTCLEAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPEFRKKTQREMEEIIPKIQVMARSLPLDKHTLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFTTIVNVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITRVMWRNIIGQSIYQIFILLVLKFRGKQILKLNGPDATSVLNTVIFNTFGFARHVQELGFPNGNVLNGMLSSDNSRYLGAFAQTVPLSRELWLASVMIGAVSLLVAVVLKCIPVPTSHYVATHHDGYEQLPTGPDLA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi135g00044 719 Gene3D - 214 358 IPR023299 GO:0000166
Sebi135g00044 719 Pfam Cation transporter/ATPase, N-terminus 34 99 IPR004014 -
Sebi135g00044 719 Pfam haloacid dehalogenase-like hydrolase 313 467 - -
Sebi135g00044 719 NCBIfam HAD-IC family P-type ATPase 419 541 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi135g00044 719 NCBIfam HAD-IC family P-type ATPase 250 399 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi135g00044 719 PANTHER CATION TRANSPORTING ATPASE 10 112 - -
Sebi135g00044 719 NCBIfam calcium-translocating P-type ATPase, PMCA-type 199 696 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi135g00044 719 Pfam Cation transport ATPase (P-type) 214 293 - -
Sebi135g00044 719 SUPERFAMILY HAD-like 347 558 IPR036412 -
Sebi135g00044 719 Pfam Cation transporting ATPase, C-terminus 538 635 IPR006068 -
Sebi135g00044 719 PRINTS H+-transporting ATPase (proton pump) signature 485 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi135g00044 719 PRINTS H+-transporting ATPase (proton pump) signature 311 329 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi135g00044 719 PRINTS H+-transporting ATPase (proton pump) signature 453 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi135g00044 719 FunFam Calcium-transporting ATPase 53 190 - -
Sebi135g00044 719 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 187 363 IPR023299 GO:0000166
Sebi135g00044 719 SMART Cation_ATPase_N_a_2 30 104 IPR004014 -
Sebi135g00044 719 Pfam E1-E2 ATPase 111 209 - -
Sebi135g00044 719 Gene3D - 40 189 - -
Sebi135g00044 719 Gene3D - 499 600 - -
Sebi135g00044 719 PRINTS P-type cation-transporting ATPase superfamily signature 477 489 - -
Sebi135g00044 719 PRINTS P-type cation-transporting ATPase superfamily signature 373 383 - -
Sebi135g00044 719 PRINTS P-type cation-transporting ATPase superfamily signature 351 362 - -
Sebi135g00044 719 PRINTS P-type cation-transporting ATPase superfamily signature 138 152 - -
Sebi135g00044 719 PRINTS P-type cation-transporting ATPase superfamily signature 453 472 - -
Sebi135g00044 719 SUPERFAMILY Calcium ATPase, transmembrane domain M 35 696 IPR023298 -
Sebi135g00044 719 FunFam Calcium-transporting ATPase 349 498 - -
Sebi135g00044 719 Gene3D - 359 498 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi135g00044 Sebi-Chr135 1503395 1507503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi135g00044 197 716 Primary Pumps ATPases AT2G41560 65.492 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi135g00044 K01537 - gmx:100805063 872.463