Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi134g00011 ATGTATCGTGGAGTCACAAGGCATCAGCAACATGGAAGATGGCAAGCAAGGATTGGCAAGGTTGCAGGAAACAAAGATCTATATTTAGGAACTTTCAGTACTGAAGAAGAGGCTGCAGAAGCATACGACATTGCTGCAATAAAGTTCAGAGGTCTTAATGCGGTAGTGAGCCGCTTCAGTGCCTTCGAGAGCCTCCATGAGACGGCTGAGGTTCAGGGACGGTGA 225 0.48 MYRGVTRHQQHGRWQARIGKVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVVSRFSAFESLHETAEVQGR 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi134g00011 74 Pfam AP2 domain 2 51 IPR001471 GO:0003700|GO:0006355
Sebi134g00011 74 CDD AP2 2 55 IPR001471 GO:0003700|GO:0006355
Sebi134g00011 74 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700|GO:0006355
Sebi134g00011 74 Gene3D AP2/ERF domain 1 60 IPR036955 GO:0003700|GO:0006355
Sebi134g00011 74 SMART rav1_2 1 65 IPR001471 GO:0003700|GO:0006355
Sebi134g00011 74 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 56 - -
Sebi134g00011 74 SUPERFAMILY DNA-binding domain 2 55 IPR016177 GO:0003677
Sebi134g00011 74 FunFam AP2-like ethylene-responsive transcription factor 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi134g00011 Sebi-Chr134 619817 620258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi134g00011 1 57 AP2-EREBP Transcription Factor Family AT3G20840 92.982 6.91e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi134g00011 AP2 7.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi134g00011 K09285 - atri:130815414 107.071