Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00146 ATGGATGATAGGCAGTGCATGCATGGACATGGTGCATTGATGGTAATACAATCCCCTGAAATGGAGCTGACCGGGTCAACACATAGCAATTTTGAAGGAGGGAAAGAGTTAGTATTATCTATTCTTAGAATAGAATGTGATGGTAATTCTGGAACAGGAAGCTCCATCACCAATCTCCCCTTTCCTCTCTCAAACATGACAAGCTTCCTTTGGCCACCCAAATCCAACAAAACAAAAAAAGGCAAATCCATCACTCAGGGAACCTCATTCTCTCCGAGCAGCGAAAACGAAGCCCTCCTCAAACTCAAACAATCCTTCACCAACACCCAATCCCTCTCTTCCTGGGTTCCCAATCAGAACCCTTGCACTTCCAAGTGGGTTGGCGTCATCTGTTTCAACAACATCATCTCCAGCCTTCACCTCACCGATTTGGGTCTCTCTGGCTCCATCGACATCGATTCCCTCATTCAGATTCCCTCACTCCGAACCATCAGCTTCGTCAACAACTCCTTCTCTGGCCCCATGCCTCCATTCAACAAACTCGGTGCTCTCAAAGCTATTTACCTATCCGAGAACCAATTCTCTGGCCCTATTCCCCCAGATTTCTTCGCCCATTTAGCTTCCCTCAAGAAGGTATGGCTCTCCAACAACAAATTCTCTGGAAACATACCTGACTCCATAACCACCCTTCGTTTCCTCACCGAATTGCATCTCGAGAACAACGACTTCTCAGGGCCTGTCCCTGAACTCAAACAGGATCTTAAATCCTTCGACATGTCTAACAACAAATTACAAGGTTCAATACCCGCTAGCATGTCAAGGTTCAATGCCAATTCCTTCCAGGGTAACGAAGCTCTCTGTGGGAAGCCTCTGGAGAAAGAGTGTGATCCATCAGAGGGACAAGGTTCTGTGTTGGTGGTGGTTTTCACGTTCCTTAAGTCAAAGCGTAACCGTGATGATGATTTCAGCGTGATGAGTAGAGGCGCATCAGAGGAGGTGGTGCAGGTGCACGTGCCAAGCTCGAAGCATAGCAGAACATCGGAGGGTAGTAGTAGGAAGGAATCAAAGAAAGGGTCTTCGAGGAGTGGTGGGATGGGTGACCTTGTGATGGTGAATGATGAAAAGGGTGTGTTTGGGTTGCCAGATTTGATGAAGGCTGCTGCTGAGGTTTTGGGAAATGGTGGGTTAGGTTCTGCCTATAAGGCTGCCATGGCTAATGGATTGTCTGTGGTGGTTAAGAGGATGCGAGAGATGAATAAAGTAAGCAGAGACATATTTGATGCTGAGATGAGAAGATTTGGAAGGCTAAGAAACCGTAACATTATGACACCTTTGGCTTACCATTACCGCAGGGAGGAAAAGCTATTTATCACTGAATACATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGACAGAGGAACAAGCCATGCTGAGCTGAATTGGCCTACTCGTTTGAAGATTGTGAAGGGGATTGCACGAGGGTTGGGCTTTCTATATACTGAATTTGCTTCAGAAGAGCTGCCTCATGGAAACCTGAAATCCAGCAATGTTTTACTAGCTGATGATCATGAGGCTCTCTTGAGTGACTTTGCCTTTCATTCACTCATCAACCCCAGCTATGCTATACAGACATTGTTTGCCTACAAAACTCCTGATTACATGCTGTACCAACAGGTTTCACAGAAGAGTGATGTTTATTGCCTTGGAATTATCATTCTTGAGATTATTACTGGGAAATTCCCTTCTCAATATCACAGTAATGGGAAAGGTGGGACAGATGTGGTGCAATGGGTCTTCACAGCAATTTCTGAGAGAAGAGAGGCAGAATTGATTGATCCAGAGTTATCAAGTGAGACAAATTCAATCAATAACATGCTGCAACTTCTCCAAATTGGGGCTGCTTGCACAGAGAGCAACCCTGAACAGAGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTGAGAGTTGCAGGCCTAGGAAAAGATGACACATTCAGCAGCATCTTGATCCAACAGTTCAGCATTCATGAATGA 2046 0.4555 MDDRQCMHGHGALMVIQSPEMELTGSTHSNFEGGKELVLSILRIECDGNSGTGSSITNLPFPLSNMTSFLWPPKSNKTKKGKSITQGTSFSPSSENEALLKLKQSFTNTQSLSSWVPNQNPCTSKWVGVICFNNIISSLHLTDLGLSGSIDIDSLIQIPSLRTISFVNNSFSGPMPPFNKLGALKAIYLSENQFSGPIPPDFFAHLASLKKVWLSNNKFSGNIPDSITTLRFLTELHLENNDFSGPVPELKQDLKSFDMSNNKLQGSIPASMSRFNANSFQGNEALCGKPLEKECDPSEGQGSVLVVVFTFLKSKRNRDDDFSVMSRGASEEVVQVHVPSSKHSRTSEGSSRKESKKGSSRSGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNIMTPLAYHYRREEKLFITEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLGFLYTEFASEELPHGNLKSSNVLLADDHEALLSDFAFHSLINPSYAIQTLFAYKTPDYMLYQQVSQKSDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELSSETNSINNMLQLLQIGAACTESNPEQRLNMKEAIRRIEEVRVAGLGKDDTFSSILIQQFSIHE 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00146 681 Gene3D Ribonuclease Inhibitor 252 299 IPR032675 -
Sebi133g00146 681 Pfam Leucine rich repeat 184 243 IPR001611 GO:0005515
Sebi133g00146 681 MobiDBLite consensus disorder prediction 333 367 - -
Sebi133g00146 681 SUPERFAMILY Protein kinase-like (PK-like) 389 655 IPR011009 -
Sebi133g00146 681 Pfam Leucine rich repeat N-terminal domain 93 131 IPR013210 -
Sebi133g00146 681 Gene3D Ribonuclease Inhibitor 93 251 IPR032675 -
Sebi133g00146 681 Gene3D Phosphorylase Kinase; domain 1 391 461 - -
Sebi133g00146 681 FunFam Nuclear pore complex protein NUP107 92 249 - -
Sebi133g00146 681 SUPERFAMILY L domain-like 92 275 - -
Sebi133g00146 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 90 659 IPR046959 -
Sebi133g00146 681 ProSiteProfiles Protein kinase domain profile. 385 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi133g00146 681 Pfam Protein kinase domain 389 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi133g00146 681 MobiDBLite consensus disorder prediction 346 360 - -
Sebi133g00146 681 Gene3D Transferase(Phosphotransferase) domain 1 462 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00146 Sebi-Chr133 1766117 1768621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00146 89 658 Receptor kinase-like Gene Family AT3G42880 52.979 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi133g00146 Pkinase 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00146 - - gmx:100816925 902.894