Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00140 ATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAACACTCTCTCTATCACCACCCTGCTCTCCTTACTACCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACAAGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAAGTACTTCTTCAAGAACTTTTTTCAAATGCAGGCCTCCTTGAAGGATGCAAGCTTATTCAAAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCACAGTTCAGCTGCACTTGCTATTGTGACCCTCAATGGAAGGAATATTTTTGGACAGCCTATTAAAGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACATCAGGCCACTTTAATATTTTTGTTGGTGACCTTAGTCCTGAGGTTACAGATGCAACTTTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCACGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGTTTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATAATTTAACTGGGAAGTGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCCACAAAAGGGGCTAATGCCAATGATGAGAAGCAGGGTTCAGATTCAAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAGGAAGGCCAGGAAGTAATCAATGATGACGCCCCAGAGAAGAATCCACAATATACCACTGTTTACGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCATCATTTCCATGCCCTTGGTGCTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGCAATGCTCGGATTCTGTTTGGCAAACCTATCAAGTGTTCATGGGGTAGTAAGCCTACTCCGCCAGGAACAGCCTCTACACCTCTTTGGCCGCCGACTGCTGCACTGCCTGCACATGTGCCAAGCTTTTCACTTGCGAGTCTTGCAGCTTATGAACGGCAGATGGCTTTGAGCAAAATGGGTGGTGCACATGGCATTGTGCATCAGCAGGGTCAACATGCCTTAAAGCAGGCAGCCATGGGAATGAGTGCTCCCGGGGCTGCTTATGATACAGGATTCCAGAGTGTTGCGACGACTCAGCACCTAATGTACTATCAGTAA 1245 0.4627 MQPQRLRQHAMMQHSLYHHPALLTTPQIEPILSGNLPPGFDSSTSRSVYVGNIHPQVTEVLLQELFSNAGLLEGCKLIQKEKSSYGFVDYFDHSSAALAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINNLTGKWLGSRQIRCNWATKGANANDEKQGSDSKSVVELTNGTSEEGQEVINDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLWPPTAALPAHVPSFSLASLAAYERQMALSKMGGAHGIVHQQGQHALKQAAMGMSAPGAAYDTGFQSVATTQHLMYYQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00140 414 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Sebi133g00140 414 SUPERFAMILY RNA-binding domain, RBD 244 330 IPR035979 GO:0003676
Sebi133g00140 414 SMART rrm1_1 253 322 IPR000504 GO:0003723
Sebi133g00140 414 SMART rrm1_1 132 205 IPR000504 GO:0003723
Sebi133g00140 414 SMART rrm1_1 47 116 IPR000504 GO:0003723
Sebi133g00140 414 Gene3D - 230 330 IPR012677 -
Sebi133g00140 414 Gene3D - 40 124 IPR012677 -
Sebi133g00140 414 Gene3D - 125 225 IPR012677 -
Sebi133g00140 414 CDD RRM2_PUB1 130 209 - -
Sebi133g00140 414 FunFam Oligouridylate-binding protein 1C 229 330 - -
Sebi133g00140 414 SUPERFAMILY RNA-binding domain, RBD 45 210 IPR035979 GO:0003676
Sebi133g00140 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Sebi133g00140 414 MobiDBLite consensus disorder prediction 211 237 - -
Sebi133g00140 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Sebi133g00140 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Sebi133g00140 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Sebi133g00140 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Sebi133g00140 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Sebi133g00140 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 245 326 - -
Sebi133g00140 414 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00140 Sebi-Chr133 1719394 1723294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00140 42 320 Eukaryotic Initiation Factors Gene Family AT3G16380 28.041 1.50e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00140 K13201 - gmx:100813736 747.658