Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00107 ATGGCTTTTCAGGATTTCGACCTCATCTCAGAACGGCGAAGAAATGAGAAGAGACAAAAGATGAGGAAGAGGATCCTCATTGGTGTTGTTTCTGCCATTGTCCTCGTTGGTCTTATAGGTTGTGCATTCTTCGTTGTTACCACAAAAAATGGTGATGGTAAAGAGGAGGAGGCTAAGACTTCTCCAACAGCAAAAGCATCTGCAGGTGCTAAGCAAATAACACATTCAGAAAAGTTTGTGAAAATGGTATGCAGCACTGCTGATTATAAAGAAAAATGTGAAGGCCCTCTTAACAAGGCAGTGAAGGATGATCCCAAACTCACACAAACACCAAAAGAGCTTATCAAGCTCTATGTCAAACTTGCTGAGGAAGAGATTAACAAGGCCTTCAACAAAACAGAATCCATGAAGTTTGAATCTGAAAAAGAAAAAGGAGCCTTTGAGGATTGCAAGACATTGTTTGAGGATGCTAAAGATGACTTAGCAACCTCTATCTCTGAACTTGGCAAAATTGAATTCAAGAAACTCTCCACAAAATCTCCTGATTTCAAGAGTTGGCTCAGTGCAGTCATCTCTTTCCAACAAACATGTATTGATGGTTTTCCAGAAGAAGGAAAATTGAGGAATGAACTTCAGAGTATCTTTAAGGACTCCAAGGAATTTGTTAGCAATTCCCTTGCCATTGTGTCTCAAGCTGGTGCTTTCCTTTCAACATTCCAAGCACTTGCACGTGGTCGTCGTTTGTTGCTGTCAGAGGATGCCAACTCCCCACCTGTTGCTACTTTAGATGAAGATGGCTTCCCTGAATGGGTTCATGATGAGGACAGAAGGATGTTGAAGGCTGCAGATAACAGACCTACACCTAATGTCACTGTGGCAAAAGATGGCAGTGGAATATTCAAAACTATCTCTGAAGCTTTAGCAGCCATCCCTCAAAACTATGAAGGACGGTATGTGGTTTATGTTAAGGAAGGAATATATGATGAGACAGTGACAGTTACAAAGAATATGCAAAATTTAACTATGTATGGTGATGGATCTCAAAAGAGCATCATCACTGGTAACAAAAACTTTAGGGATGGAGTCAGGACTTTCCAAACTGCAAGTTTTGTGGTGCTTGGAGAAGGATTTGTGGGGCTAGCAATGGGATTCAGAAACACTGCTGGCCCTGATGGGCATCAAGCAGTGGCTGCTAGAGTGCAAGCAGATCGTGCAGTGTTTGCAAACTGTCGCTTTGAGGGCTACCAAGACACCCTATACACTCAAACCCACAGACAATTCTACCGTAGTTGTATTGTTTCAGGAACAATTGATTTCATCTTTGGTGATGCAGCTGTTGTGTTCCAGAACTGCATCATGATTGTTAGGAAACCAATGGACAACCAGCAGAACATGGTGACTGCTCAAGGGAGAACAGACAAGCAACAAAACACTGGAATTGTTCTGCAAAAATGTACTATCAAAGCTGATGATGCATTCATTCCTGTGAAAGACAAAATCAGGAGCTACCTTGGGAGGCCATGGAAGGAATTCTCAAGAACAATTGTTATGGAATCAGAAATAGGTGATTTCATTCACCCTGATGGGTGGACACCTTGGATGGGTGATTTTGCACTCAATACACTGTATTATGCTGAGTTCAACAACACAGGACCTGGTGCTAGCACCACTAATAGGGTCAAGTGGCCTGGTTACCATGTCATTAACAAGGAGGAGGCTGACAAGTTCACTGTTGGGACTTTCTTGAAAGGCAATTGGGTACAGAGCTCAGGGGTTCCATCTGTGCAGGGATTTTACTATTAA 1803 0.4237 MAFQDFDLISERRRNEKRQKMRKRILIGVVSAIVLVGLIGCAFFVVTTKNGDGKEEEAKTSPTAKASAGAKQITHSEKFVKMVCSTADYKEKCEGPLNKAVKDDPKLTQTPKELIKLYVKLAEEEINKAFNKTESMKFESEKEKGAFEDCKTLFEDAKDDLATSISELGKIEFKKLSTKSPDFKSWLSAVISFQQTCIDGFPEEGKLRNELQSIFKDSKEFVSNSLAIVSQAGAFLSTFQALARGRRLLLSEDANSPPVATLDEDGFPEWVHDEDRRMLKAADNRPTPNVTVAKDGSGIFKTISEALAAIPQNYEGRYVVYVKEGIYDETVTVTKNMQNLTMYGDGSQKSIITGNKNFRDGVRTFQTASFVVLGEGFVGLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIVSGTIDFIFGDAAVVFQNCIMIVRKPMDNQQNMVTAQGRTDKQQNTGIVLQKCTIKADDAFIPVKDKIRSYLGRPWKEFSRTIVMESEIGDFIHPDGWTPWMGDFALNTLYYAEFNNTGPGASTTNRVKWPGYHVINKEEADKFTVGTFLKGNWVQSSGVPSVQGFYY 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00107 600 Pfam Pectinesterase 289 585 IPR000070 GO:0030599|GO:0042545
Sebi133g00107 600 FunFam Pectinesterase 76 233 - -
Sebi133g00107 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 232 IPR035513 -
Sebi133g00107 600 SUPERFAMILY Pectin lyase-like 286 593 IPR011050 -
Sebi133g00107 600 Gene3D - 284 598 IPR012334 -
Sebi133g00107 600 Pfam Plant invertase/pectin methylesterase inhibitor 78 228 IPR006501 GO:0004857
Sebi133g00107 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 231 IPR035513 -
Sebi133g00107 600 NCBIfam pectinesterase inhibitor domain 73 231 IPR006501 GO:0004857
Sebi133g00107 600 SMART PMEI_2 75 228 IPR006501 GO:0004857
Sebi133g00107 600 FunFam Pectinesterase 283 598 - -
Sebi133g00107 600 CDD PMEI-like_3 83 230 - -
Sebi133g00107 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Sebi133g00107 600 PANTHER PECTINESTERASE 39 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00107 Sebi-Chr133 1277444 1279704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00107 1 599 Carbohydrate Esterase AT2G26450 47.778 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00107 - - gmx:100784679 923.694