Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi133g00099 | ATGGAGAGGATGCCAGAAACAGAGGACACGTGTGCTATTTGCTTGAACCACCTGAAAATGGAAGATGAGGTTAGGGAACTGATGAATTGTTACCATGTGTTCCATAAGGAATGCATAGATAGATGGTTGGAACATGACCATGACAATGAAACCCATAACCCAACTTGTCCACTATGCAGAGCCCCTTTGTTGAGTTCTTATTGCCTTTCATCAGAGAGCTCAAGCTGTGTACCTCCACCTCAACCTAGCTGGGCTGTGGACAGACTTCTCTATCTCTTTGGGGATGATCTTCTACCTTATTAG | 303 | 0.4455 | MERMPETEDTCAICLNHLKMEDEVRELMNCYHVFHKECIDRWLEHDHDNETHNPTCPLCRAPLLSSYCLSSESSSCVPPPQPSWAVDRLLYLFGDDLLPY | 100 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi133g00099 | 100 | SMART | ringv_2 | 10 | 60 | IPR011016 | GO:0008270 | |
| Sebi133g00099 | 100 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 67 | IPR013083 | - | |
| Sebi133g00099 | 100 | SUPERFAMILY | RING/U-box | 7 | 66 | - | - | |
| Sebi133g00099 | 100 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 98 | - | - | |
| Sebi133g00099 | 100 | SMART | ring_2 | 11 | 59 | IPR001841 | - | |
| Sebi133g00099 | 100 | ProSiteProfiles | Zinc finger RING-type profile. | 11 | 60 | IPR001841 | - | |
| Sebi133g00099 | 100 | Pfam | Ring finger domain | 9 | 60 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi133g00099 | 1 | 99 | C3H Transcription Factor Family | AT3G43430 | 55.340 | 8.73e-31 | 105 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi133g00099 | K16281 | - | gmx:111138523 | 157.918 |