Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00074 ATGGAACCGGATGACTGGGGCTTGAGTGCTGAGGACTTTGATTCCCTCGAACGAGACGCTTTCCAGAAGATTGCTCAACTACGCCATTCTTCTTCTTCTCAGCAACAACACCATTCTACAACCAACCACTTGGAACGATTCCCATCAAACCCCCTTCCCGATTCACGTCAACAAAGAGTTGATGCTTTGTCTCAAGGAGCCAGAGCAGTAGTACTACCCACGTCATTGAAACCAGGGACAGCAACAAACAAAGATGAACATCCGAAAGAAGTGCCAAAGATTTCTGTCAAATTTTTTCTTCATTCTAGTGGAAGTGTTGCGGCAAAGTTTCAATATGACCAGGTAGTTGTTGCTGCTTTTCGGAGAATTCCTAAATCTTCCTGGAATGCAAAAGAACGGTTATGGGTGTTTCCACTGTCTTCTTTGTCAGAAGCAGAAAAGATTCTTGGAGAAGTATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAGCGGGCAGTTGCTGCTGCCTCCAGTGTTCCAGATCTTCGAGATCGATATGACAATATCCCTAGCGATATTGAATCAAAGCTTATGCCATTTCAGCGAGAAGGTGTTAGGTTTCTATTGCAGCATGGATGTCGTGCTCTTTTAGCAGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGACTCATGGCCTGTTCTCATACTTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAAAGGAGGTTTCAATATAGTCTCTTCAAATGCTAAAAGTGGCATTCATCTGGATGGACTATTCAACATCATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCATGGCGTCCGACTTTAAGGTTGTAATTGCTGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGGTATTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCATCTAACTCAAAAGAGGAGATATATACTGATTCTGCCGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGGACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAACCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGTATTGATGGAAGTACACCTGCTGCATCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCAATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCAGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGTTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTAGATGGCCATGAGAAAACCTTAGAGGTCTCATCTAGTCGGCCAGGGAATAGCCCTGCAAAGCGGAAAACTGTTGAACAGTGTCAACCAGGGAATAGCCCTGCAAAGCAGAAGACTCTTGACCAGTTTGTTAGAAGATGTGACAACATGGATGCGTTGGAACATCAGTCCAACCCCAAACGTCCCCGGCACTGA 1800 0.4294 MEPDDWGLSAEDFDSLERDAFQKIAQLRHSSSSQQQHHSTTNHLERFPSNPLPDSRQQRVDALSQGARAVVLPTSLKPGTATNKDEHPKEVPKISVKFFLHSSGSVAAKFQYDQVVVAAFRRIPKSSWNAKERLWVFPLSSLSEAEKILGEVSGYNVQVENLDPLVQRAVAAASSVPDLRDRYDNIPSDIESKLMPFQREGVRFLLQHGCRALLADEMGLGKTLQAIAVAACVQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNKGGFNIVSSNAKSGIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKVFLDLADKDMKQINALFRELERVKAKIKASNSKEEIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKTLEVSSSRPGNSPAKRKTVEQCQPGNSPAKQKTLDQFVRRCDNMDALEHQSNPKRPRH 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00074 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 338 IPR027417 -
Sebi133g00074 599 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 346 591 - -
Sebi133g00074 599 SMART ultradead3 190 381 IPR014001 -
Sebi133g00074 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 344 IPR014001 -
Sebi133g00074 599 MobiDBLite consensus disorder prediction 545 574 - -
Sebi133g00074 599 CDD SF2_C_SNF 388 512 - -
Sebi133g00074 599 ProSiteProfiles HARP domain profile. 90 164 IPR010003 -
Sebi133g00074 599 Pfam Helicase conserved C-terminal domain 402 501 IPR001650 -
Sebi133g00074 599 MobiDBLite consensus disorder prediction 542 575 - -
Sebi133g00074 599 Pfam SNF2-related domain 207 339 IPR000330 GO:0005524|GO:0140658
Sebi133g00074 599 FunFam Chromatin remodeling factor18 364 595 - -
Sebi133g00074 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 547 IPR027417 -
Sebi133g00074 599 SMART helicmild6 418 501 IPR001650 -
Sebi133g00074 599 Gene3D - 363 589 IPR027417 -
Sebi133g00074 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 544 IPR001650 -
Sebi133g00074 599 Coils Coil 348 378 - -
Sebi133g00074 599 Gene3D - 169 345 IPR038718 -
Sebi133g00074 599 MobiDBLite consensus disorder prediction 26 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00074 Sebi-Chr133 935068 946594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00074 388 549 RAD5 or RAD16-like Gene Family AT5G22750 30.864 1.53e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi133g00074 SNF2_N 8.8e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00074 K14440 - gmx:100797654 542.347