Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00068 ATGGAAGGGGATATCAGTTTGGATGAAGATGCTGCTAAGAGTCTTCAACCAGTTGTAGATCCTGACAGCAAGCAAGATTCAAAGACAAGCAAGGCCAAAGATGAAACCACCAAAACAGTACCTTTATACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGGAATGGAATCTCCATGCCCTTGATGACTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGAAACTAATACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTAGGACAGTTCATACAGTTAGTGGCAACTTTCTTTGGAGGTTTTGTCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTTGTCTTGTCTGGTGCTATGATGAGCATGGTTATTACAAAAGCATCATCCAGTGGACAAGCAGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAAACAATTGGTTCAATCCGAACTGTTGCATCGTTCACTGGGGAGAAGCAAGCTATAGCTAAATATAATCAGTCCTTAATTAAAGCTTACAAGACTGTAGTGCAAGAGGCAATAGCTTCTGGTTTGGGATTTGGTTCACTCTATTTTGTTGTTATTGCCAGTTATGCTTTAGCCATATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAGGTTGTGACTGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCGGCAACTTGATGATATTCGTGGAGATATAGAACTAAGGGACGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGATTTTCTCTTTCAATACCAAGTGGTGCTACTGCAGCCTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGTATCAACCTTAAAGAATTTCAACTGAAATGGATCAGACAGAAGATAGGCCTGGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCCTATGGAAAGGATGGTGCAACTGATGAAGAAATTAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAACTCTCTGGTGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCTAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTAATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAGCTCACCAGGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATGAAAGGGTCAGAACAGAAAGTTGTAAATGACACAGAGAAGCCAGAAAGTATAACACTTTCTGGAAGACAATCAAGTCAAAGATCATTTTCCTTACGATCTATAAGCCATGAGTCATCTGGAGTTGGAAACAGTGGTCGTCTTTCATTCTCAGCATCATATGGTGTACCCACAACAGTTGCCATTTTGGAACCTACAAGTGAAGGACCTCCTTCAACAGCTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCTTATTTAAATAAGCCTGAAATTCCAGTCTTACTGATAGGCACTATAGCTGCAGTGGCACATGGAGTGATCTTACCCATTTTTGGGCTCTTACTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTGATGAACTTCGTGACGATTCAAGGGTTTGGGCATTAGTATTTGTTGGGTTTGCTGTGGCATCATTACTCATTTTTCCATGTAGATTCTACTTTTTTGGCATTGCTGGTGGTAAGTTGATCAAGAGGATCCGGAAAATGTGTTTTGAGAAATTAGTTCACATGGAAGTGAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTAGAGCTTTGGTTGGGGATGCACTTGGTTTGCTAGTTGAAAATATTGCTACAGCAATAGCTGGATTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTATTAGGACTAAATGGATATTTACAAGTGAAGTTCTTGAAAGGGTTCAGCGCTGATTCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATATCAGGAAAAATTTTATGCATGCAGTTTTTATGCAGGAGCTCGTCTTGTAGAGGATGGAAAAACAACAATGACAGATGTTTTCCGTGTCTTTTTTGCTCTTAGCATGGCAGCTATAGGAATGTCTCAATCTGGGACCTTGGTTCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTACTATTCTTGATCGGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGTTTAAGCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTAATACAAAGATTTTATAACCCAGACTCAGGTAACATTACACTGGAAGGAGTAGAAATCCAAAGGCTGCAAGTGAAATGGCTAAGACAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTTAATGAAACCATCAGAGCTAATATTGCATATGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTAGCAAATGCTCACAAGTTCATTAGTAGTTTGCAAAAGGGTTATGACACAATAGTAGGGGAGAGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGGGTGGCAATTGCACGAGCCATAGTGAAGAATCCAAAAATATTACTACTTGATGAAGCCACTAGTGCACTTGATGCTGAGTCTGAAAAAGTTGTTCAGGATGCACTTGACCGTGTTATGGTAGACCGAACCACAATAGTTGTGGCTCATAGATTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTTATTGCAGAGAAAGGAAAGCATGAAGCATTACTCCGTAAGGGAGGTGACTATGCTTCCTTAGTAGCATTGCACACTAGTGCTTCTTCATCTTAG 3576 0.4086 MEGDISLDEDAAKSLQPVVDPDSKQDSKTSKAKDETTKTVPLYKLFSFADSLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSTNTKEVVDEVSKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLVATFFGGFVIAFIKGWLLTVVMLSCIPLLVLSGAMMSMVITKASSSGQAAYSTAASVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYKTVVQEAIASGLGFGSLYFVVIASYALAIWFGGKMIIEKGYTGGEVVTVSWAGISKLECFAAGQAAAFKMFETIKRKPEIDAYDTTGRQLDDIRGDIELRDVCFSYPTRPDELIFNGFSLSIPSGATAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVEKGSHAELTRDPDGAYSQLIRLQEMKGSEQKVVNDTEKPESITLSGRQSSQRSFSLRSISHESSGVGNSGRLSFSASYGVPTTVAILEPTSEGPPSTASSPPEVPLYRLAYLNKPEIPVLLIGTIAAVAHGVILPIFGLLLSKMISIFYEPADELRDDSRVWALVFVGFAVASLLIFPCRFYFFGIAGGKLIKRIRKMCFEKLVHMEVSWFDEAEHSSGALGARLSTDAASVRALVGDALGLLVENIATAIAGLVIAFVASWQLALIILALVPLLGLNGYLQVKFLKGFSADSKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKFYACSFYAGARLVEDGKTTMTDVFRVFFALSMAAIGMSQSGTLVPDSTKAKSAAASIFTILDRKSQIDPSDESGMTLEEVKGEIEFKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLIQRFYNPDSGNITLEGVEIQRLQVKWLRQQMGLVSQEPVLFNETIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLRKGGDYASLVALHTSASSS 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00068 1191 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 947 1184 IPR003439 GO:0005524
Sebi133g00068 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 556 IPR027417 -
Sebi133g00068 1191 Pfam ABC transporter 967 1115 IPR003439 GO:0005524
Sebi133g00068 1191 CDD ABC_MTABC3_MDL1_MDL2 318 556 - -
Sebi133g00068 1191 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 654 864 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi133g00068 1191 Gene3D ABC transporter type 1, transmembrane domain 102 863 IPR036640 GO:0005524|GO:0016020
Sebi133g00068 1191 MobiDBLite consensus disorder prediction 1 33 - -
Sebi133g00068 1191 FunFam ABC transporter B family member 1 308 557 - -
Sebi133g00068 1191 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 318 554 IPR003439 GO:0005524
Sebi133g00068 1191 FunFam ABC transporter B family member 1 937 1186 - -
Sebi133g00068 1191 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 101 270 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi133g00068 1191 ProSitePatterns ABC transporters family signature. 1087 1101 IPR017871 GO:0005524|GO:0016887
Sebi133g00068 1191 CDD ABC_MTABC3_MDL1_MDL2 947 1182 - -
Sebi133g00068 1191 MobiDBLite consensus disorder prediction 570 602 - -
Sebi133g00068 1191 Pfam ABC transporter transmembrane region 653 863 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi133g00068 1191 Pfam ABC transporter transmembrane region 101 270 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi133g00068 1191 Gene3D - 937 1190 IPR027417 -
Sebi133g00068 1191 Gene3D ABC transporter type 1, transmembrane domain 36 100 IPR036640 GO:0005524|GO:0016020
Sebi133g00068 1191 SUPERFAMILY ABC transporter transmembrane region 44 296 IPR036640 GO:0005524|GO:0016020
Sebi133g00068 1191 Gene3D - 316 569 IPR027417 -
Sebi133g00068 1191 FunFam ABC transporter B family member 1 633 864 - -
Sebi133g00068 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1184 IPR027417 -
Sebi133g00068 1191 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 291 - -
Sebi133g00068 1191 Pfam ABC transporter 337 485 IPR003439 GO:0005524
Sebi133g00068 1191 CDD ABC_6TM_Pgp_ABCB1_D2_like 643 930 - -
Sebi133g00068 1191 FunFam ABC transporter B family member 9 914 936 - -
Sebi133g00068 1191 SMART AAA_5 974 1167 IPR003593 GO:0016887
Sebi133g00068 1191 SMART AAA_5 345 531 IPR003593 GO:0016887
Sebi133g00068 1191 MobiDBLite consensus disorder prediction 560 602 - -
Sebi133g00068 1191 ProSitePatterns ABC transporters family signature. 457 471 IPR017871 GO:0005524|GO:0016887
Sebi133g00068 1191 PANTHER ABC TRANSPORTER B FAMILY 99 559 IPR039421 -
Sebi133g00068 1191 SUPERFAMILY ABC transporter transmembrane region 641 931 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00068 Sebi-Chr133 871617 877075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00068 655 1191 Calmodulin-binding Proteins AT2G36910 40.244 8.13e-121 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00068 K05658 - gmx:100800293 1880.53