LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi133g00066	ATGGAAGGGGATATCAGTTTGGATGAAGATGCTAAGAGTCTTCAACCAGTTGTAGATCCTGACAGCAAGCAAGATTCAAAGACAAGCAAGGCCAAAGATGAAACCACCAAAACCGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGAAATGGAATCTCCATGCCCTTGATGACTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTCAATTTTGTGTACTTGGCTGTGGGTACCTTCATTGCATCCCTTTTGCAGTTGACTTGTTGGATGATCACTGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTCAAAGTATTTTGAGGCAAGATGTGAGCTTCTTTGATAAGGAAACTAGTACTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATAGAGTTAGTGACAACTTTCTTTGGAGGTTTTGTCATGGCCTTTATCAGGGGATGGCTTCTAACTATTGTCATGCTATCTTGTATTCCACTTCTTGCCCTGTTTGGTGCTATGATGAGCATGGTTATTGCAAAAGCATCATCTAGTGAACAAGCAGCTTCATCTACAGCAGCCAGTATAGTTGAGCAGACAATAGGTTCAATCAGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATACAACCAATCCTTAATCAAAGCTTACAATACTACAGTGCAAGAGGCACTAGCTTCTGGTGTGGGGTTTGGTTCAATTTTTTTTGTTGTTATGTCCAGTTATGGTTTAGCTGTATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAGGTTGCGAATGTAATTTTTGCTGTATTGGTTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGAGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACGATTAAAAGGATGCCAGAAATTGATGCTTATGACACTACTGGTCGGAAACTTGATGATATTCATGGAGATATAGAACTAAGGGAGGTTTGCTTTAGTTATCCTACAAGACTAGATGAACTGATACTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCCTTGGTTGGGCAAAGTGGGAGTGGGAAATCCACAATTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTAAAGTTCTCATTGATGGTATAAACCTCAAAGAATTTCAACTGAAATGGATCAGACATAAGATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCTTATGGAAAGGATGGTGCAACTGATGAAGAAATCAGATCTGTAGCAGAGCTTGCTAATGCTACCAAATTTATAGATATACTTCCTCAGATGAACTTTCAAATCTTCATTTAA	1539	0.4035	MEGDISLDEDAKSLQPVVDPDSKQDSKTSKAKDETTKTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSTNTKEVVDEVSKVSLNFVYLAVGTFIASLLQLTCWMITGERQAARIRGLYLQSILRQDVSFFDKETSTGEVVGRMSGDTVLIQDAMGEKVGQFIELVTTFFGGFVMAFIRGWLLTIVMLSCIPLLALFGAMMSMVIAKASSSEQAASSTAASIVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYNTTVQEALASGVGFGSIFFVVMSSYGLAVWFGGKMIIEKGYTGGEVANVIFAVLVGSMSLGQASPSLRAFAAGQAAAFKMFETIKRMPEIDAYDTTGRKLDDIHGDIELREVCFSYPTRLDELILNGFSLSIPSGTTAALVGQSGSGKSTIVSLIERFYDPQAGKVLIDGINLKEFQLKWIRHKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRSVAELANATKFIDILPQMNFQIFI	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi133g00066	512	CDD	ABC_6TM_Pgp_ABCB1_D1_like	56	339	-	-
	Sebi133g00066	512	PANTHER	ABC TRANSPORTER B FAMILY	20	505	IPR039421	-
	Sebi133g00066	512	SUPERFAMILY	ABC transporter transmembrane region	43	363	IPR036640	GO:0005524\|GO:0016020
	Sebi133g00066	512	Gene3D	-	369	505	IPR027417	-
	Sebi133g00066	512	Gene3D	ABC transporter type 1, transmembrane domain	43	368	IPR036640	GO:0005524\|GO:0016020
	Sebi133g00066	512	MobiDBLite	consensus disorder prediction	1	32	-	-
	Sebi133g00066	512	FunFam	ABC transporter B family member 9	43	375	-	-
	Sebi133g00066	512	Pfam	ABC transporter transmembrane region	56	330	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Sebi133g00066	512	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	371	505	IPR027417	-
	Sebi133g00066	512	Pfam	ABC transporter	397	494	IPR003439	GO:0005524
	Sebi133g00066	512	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	57	344	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi133g00066	Sebi-Chr133	860173	862330	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi133g00066	57	505	Calmodulin-binding Proteins	AT2G36910	28.982	9.79e-62	217

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi133g00066	K05658		-	gmx:100800293	818.15