Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00051 ATGGGTGTGGTTGTGCTACTTGCTGCAGTTCTTATGGCAGCAGCAACTCAAACTGAAACACAATCTTTGCCAATTCACCCAAAGCCAGAGTGCCCAACAATAACAAAGTGTGGGTCCGTCAACATTCCGTTCCCATTTGGCACAACCGAGGATTGTTCCCTAGACACTTCTTTCATCATCGGTTGCAACAAAACCTCTTCACCACACACACCTTTCTTGCCTGCAAACAATCTAACTGTGCTAAACATCTCACTCAACGACGGCGAACTACGCGTTGCGTGGCCAGTAGCCAGCGATTGCTACGGTAATAATGGCACACAGGTGAGTGAAACACCTCAGTTATTTAACCTGACGACGCCTCCTAATCCTAATCCTACTTTTCACTTATCGTCAACTCGAAACAAGTTGATAGTGGTTGGTTGTGACACCTTTGGACTAGTGATTGGATATGATGGTACAGAGGAAAAGAACTACACCACTGGATGCGTGTCTCTGTGCAATAGGCTTGATGACATCGTAGCCAATGGATCCTGCTCTGGTGTTGGTTGTTGCCAGACTTCAATACCCCAAAGACTATCCACTATGTTTTATGGTTCTAGCTCCTTATTAAACAACCACACAAATGTGATTGCCTTCAATCCATGCGGTTACACTTTTCTGGCTGAAGATGGAGCCTACAATTTCACCTCCACAGACCTTAAAAGGTTTGAGACGACGGCATTTCCTGTGGTGGTGGATTGGGCGGTGGGGAACCAAACATGCCGAGAAGCTAAGAAGGAGGAATCGAGTTATGCGTGTAAAGCTGACAACAGTGAGTGTCACGATTCCCCTGAGGGAAAGGGAACTGGTTATCTTTGCAATTGCTCTGCTGGTTTTCAGGGGAACCCTTACCTCCTCAATGGCTGCCAAGATGTTGATGAATGCATGAAATCCAACAACTGCATTCCTGGAGCGATATGCAGCAACTTCCCTGGGGGCTACAATTGTTCATGCCCACAAGGATATGACGAAGGATATGAAGGAGACGACAAAAGATGCATTCCCATATCTAATACCAATTCCAACAGAGAGATCATTCTCATAATTGCTTTGAGTGTGAGTGTAAGCATCATAGCAATACTCATAGCAAGCTTTTATGTGTATCGCACAATGAAGAAAAGAAAGCTCATCAAACTTAAACAACAATTTTTTCAACAAAATGGTGGCCTATTGTTACAACAACAGATAGCCAAGCATAGAGGGTCAGCTGAAATGGCTAAAGTCTTCACTATAGAGGAGCTAAAGGAGGCTACCAATAACTTTGATGAAGGCAGGGTACTAGGCCAAGGTGGACAGGGAACAGTTTACAAAGGACTACTAGTAGATAACAGGATTGTAGCAATAAAAAAATCCAGAATCGGTGACCCAAAACAGATCGAGCAGTTCATCAATGAGGTGATCTTGCTTTCCCAAATCAACCATAGGAATGTGGTGAAGCTCTTAGGTTGTTGTTTAGAGACAGAATTTCCCTTGCTTGTTTATGAATTCATTCCCAATGTGCATTTTGTTTCTTCAATGAAAGAGGGTCGATTACTTGACATTGTCGACAAGGACATAATAGATGAGGCAACTGTTGAGCAACTGGTGGTAGTTGCCAATATTGCAAAGATGTGTTTAAGGGTGAATGGAGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATGATAGGTACGGAAAAGCATCGATGGGAAAGTGTCAACTTGTCTTCAGAAGAGGCTGAAAACTTGCTTAAAACAACAGTACCAGCTATTTTCAATGTTGAAGATGGTGCTGTTAGTGGAAGTGGCATTAGTTCTTCTGGCTTTGATAGCTTAAATCATATTTCCATGTCATTGGGTGGTGGAAGGTGA 1902 0.4343 MGVVVLLAAVLMAAATQTETQSLPIHPKPECPTITKCGSVNIPFPFGTTEDCSLDTSFIIGCNKTSSPHTPFLPANNLTVLNISLNDGELRVAWPVASDCYGNNGTQVSETPQLFNLTTPPNPNPTFHLSSTRNKLIVVGCDTFGLVIGYDGTEEKNYTTGCVSLCNRLDDIVANGSCSGVGCCQTSIPQRLSTMFYGSSSLLNNHTNVIAFNPCGYTFLAEDGAYNFTSTDLKRFETTAFPVVVDWAVGNQTCREAKKEESSYACKADNSECHDSPEGKGTGYLCNCSAGFQGNPYLLNGCQDVDECMKSNNCIPGAICSNFPGGYNCSCPQGYDEGYEGDDKRCIPISNTNSNREIILIIALSVSVSIIAILIASFYVYRTMKKRKLIKLKQQFFQQNGGLLLQQQIAKHRGSAEMAKVFTIEELKEATNNFDEGRVLGQGGQGTVYKGLLVDNRIVAIKKSRIGDPKQIEQFINEVILLSQINHRNVVKLLGCCLETEFPLLVYEFIPNVHFVSSMKEGRLLDIVDKDIIDEATVEQLVVVANIAKMCLRVNGEERPTMKEVAMELEGMIGTEKHRWESVNLSSEEAENLLKTTVPAIFNVEDGAVSGSGISSSGFDSLNHISMSLGGGR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00051 633 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 320 331 IPR000152 -
Sebi133g00051 633 SMART egfca_6 304 347 IPR001881 GO:0005509
Sebi133g00051 633 Pfam Protein tyrosine and serine/threonine kinase 437 521 IPR001245 GO:0004672|GO:0006468
Sebi133g00051 633 Gene3D Phosphorylase Kinase; domain 1 405 505 - -
Sebi133g00051 633 Pfam Wall-associated receptor kinase galacturonan-binding 31 93 IPR025287 GO:0030247
Sebi133g00051 633 ProSiteProfiles EGF-like domain profile. 304 347 IPR000742 -
Sebi133g00051 633 SUPERFAMILY Protein kinase-like (PK-like) 418 525 IPR011009 -
Sebi133g00051 633 ProSiteProfiles Protein kinase domain profile. 434 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi133g00051 633 SMART egf_5 253 303 IPR000742 -
Sebi133g00051 633 SMART egf_5 307 347 IPR000742 -
Sebi133g00051 633 Gene3D Transferase(Phosphotransferase) domain 1 506 594 - -
Sebi133g00051 633 FunFam Wall-associated receptor kinase 2 404 509 - -
Sebi133g00051 633 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 514 573 IPR045274 GO:0007166
Sebi133g00051 633 ProSitePatterns Calcium-binding EGF-like domain signature. 304 329 IPR018097 GO:0005509
Sebi133g00051 633 Gene3D Laminin 264 340 - -
Sebi133g00051 633 CDD EGF_CA 304 335 - -
Sebi133g00051 633 SUPERFAMILY EGF/Laminin 302 351 - -
Sebi133g00051 633 FunFam Fibrillin 2 299 347 - -
Sebi133g00051 633 Pfam Calcium-binding EGF domain 304 346 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00051 Sebi-Chr133 706759 709922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00051 514 633 Receptor kinase-like Gene Family AT1G21230 37.398 3.01e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi133g00051 PK_Tyr_Ser-Thr 7.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00051 - - gmx:100798027 624.009