Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi133g00007 ATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCTTTGCATAATCAACATACTCTTCCTGGGTGTTGGTCCCATCCAAGTCCGGTATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTTCAGTTAAGGAAGTCGAGGAAATTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCACAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATCTACACAATGAGAGATTGTGATCAACCATTGATTGTCCGATTTGCTGATCCAAAGAGACCTCGTCAAGCAGATTCCAGGGGTTCTGCATTTGGGGGTCCAGGGTTTGGTCCAAGATTTGATGCACCAGGCACTAGACTTCCATCCAATATTTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCCTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATTCTGGTTTTCATGGCATGGGCCCTCCGTTGCTTCCAAGATCTGGTGACATGGCAGCGCCTATAAATGGAGGTGGCCCTATGACTGGCATGGGAGTCCCCATAGATGGTCGTTTTCAAGTTCCGTCATCAATGCCACAACAGAATTTCAACCAGCCTCTACCGCAAATTCCACCAGTCAATCAACAAATATCACCATTGAAGAAACCTATTCAATCATCTCAGGAGTTACCACATTCCCACCAGTTGTATCCTCAAGCCCGGATGCCCTACCCACAAACATCAACACTTCCATCTCTTAGGCAGCATGGTCAGCCTCAACTTCCTCTCTCTGGTAGTCCTCTTCCATCACAGCAGGGACTTGGCATAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAGCAGAGTGCTATGTCTGCTACAATTCCTCAGGCCCCTTTTGATACCGGTATGCAATCTAATACACCATTGACTACACCAAATCAGCAGCAAGTTCCTCCCTCTATGCAGCAGCAATCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAGACACAGAATTTACAAGCGAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCATTACCATCTAGTCATGCAATAACATTGCAGCAAAATTCAGAAACTACTAAAAAGCAGCCTCAATGGGCTGGATCTGTAGCACAGGCGGTGGCCAGCACTCATGTAGCTGCACCTGCTGCAGATGTGCCTCCATCCACATCTGCTACTTCTGCTGTAGCAGCAATAAGCCAGAACACGACTCCTGCAAAATGTAACTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGGGAAAGTCGGTGGGAGAAACCTGAGGAGCTAATATTATCTGAACAACAAAAGCAACAACAGAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAATGCTACCCACCCAGCAAGTAACACAAATCCAACACGTTCAGCCCCAAAGTCATCTCCAAGGACAGGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTCATTCCAGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCTGGACGCTACTCACAGGTCTGTTTGACCTAA 1788 0.4625 MLPQKKLIRQLELCIINILFLGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRDCDQPLIVRFADPKRPRQADSRGSAFGGPGFGPRFDAPGTRLPSNISDPMGDRMPPPNAWRPMHPPNMGPSSNSGFHGMGPPLLPRSGDMAAPINGGGPMTGMGVPIDGRFQVPSSMPQQNFNQPLPQIPPVNQQISPLKKPIQSSQELPHSHQLYPQARMPYPQTSTLPSLRQHGQPQLPLSGSPLPSQQGLGISGQFPTSQPQTQQSAMSATIPQAPFDTGMQSNTPLTTPNQQQVPPSMQQQSLQPLQQSPSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMMQPLPSSHAITLQQNSETTKKQPQWAGSVAQAVASTHVAAPAADVPPSTSATSAVAAISQNTTPAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELILSEQQKQQQRPSVQQSQTQSQPSMLPTQQVTQIQHVQPQSHLQGQVLHQQQIQQPSLSSSFQAYGVTGHQNVQEVGYKQLQASVISAGDPGRYSQVCLT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi133g00007 595 SUPERFAMILY RNA-binding domain, RBD 43 144 IPR035979 GO:0003676
Sebi133g00007 595 MobiDBLite consensus disorder prediction 223 354 - -
Sebi133g00007 595 SUPERFAMILY WW domain 466 497 IPR036020 GO:0005515
Sebi133g00007 595 SMART ww_5 462 494 IPR001202 GO:0005515
Sebi133g00007 595 Gene3D - 460 510 - -
Sebi133g00007 595 ProSiteProfiles WW/rsp5/WWP domain profile. 461 494 IPR001202 GO:0005515
Sebi133g00007 595 ProSitePatterns WW/rsp5/WWP domain signature. 467 492 IPR001202 GO:0005515
Sebi133g00007 595 MobiDBLite consensus disorder prediction 124 160 - -
Sebi133g00007 595 Pfam WW domain 466 492 IPR001202 GO:0005515
Sebi133g00007 595 PANTHER RNA BINDING PROTEIN 30 400 - -
Sebi133g00007 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 108 IPR000504 GO:0003723
Sebi133g00007 595 FunFam Flowering time control protein FCA 39 129 - -
Sebi133g00007 595 Gene3D - 24 131 IPR012677 -
Sebi133g00007 595 MobiDBLite consensus disorder prediction 221 354 - -
Sebi133g00007 595 SMART rrm1_1 44 119 IPR000504 GO:0003723
Sebi133g00007 595 MobiDBLite consensus disorder prediction 498 532 - -
Sebi133g00007 595 CDD WW 464 494 IPR001202 GO:0005515
Sebi133g00007 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi133g00007 Sebi-Chr133 144170 151700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi133g00007 8 132 Eukaryotic Initiation Factors Gene Family AT1G71770 30.709 1.00e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi133g00007 - - gmx:100798390 772.311