Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi133g00004 | ATGGAGGAAGCTGACCAGTACGAATCGGTTGGGCTGGATGACTCGTTGGAAGATGATAGGGATTTTGATCAGATCATGGAAGATCGAAGGGCTGCAGAGGTGGAGCTCGACAACCGTGATGGTCGCGTTTCCAATCGCAACAAACTTCCTCAGCTTCTGCACGACCAGGATACAGATGATGACAGTTATAGGCCTTCTAAAAGGTCTCGAGCTGATTTCAGGCCTCCAGTTCCAAGCGATGATGATCTTGATGGGATGCAAAGTTCACCTGGAAGGTCACAACGAGGACACTCAAGAGAAGATGTTCCAATGACTGATCAAACTGAGGATGATCGATATGAGGATGAATATGATGATGGTGGGTACGAGATGTACCATGTTCAAGGTACACTCAGAGAATGGGTTACAAGAGATGAAGTGCGCCGATTCATAGCCCGGAAATTCAAGGATTTCTTACTCACATATGTCAATCCAAAAAATGAACATGGTCAATTTGAATATGTGCGCCTGATAAATGAGATGGTGTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAATTTATCTATGTCCATCCCAACATTGCCATATGGCTGGCTGATGCACCTCAGTCTGTTTTAGAAGTAATGGAAGACGTTGCCAAAGTGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGGCGCTCTGGAGTTTTCCCCCAATTGCAACAGGTGAAGTATGACTGCAACAAATGTGGGGCCATTTTGGGACCTTTTTTTCAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTCCCGAGTGTCAGTCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGAATAGTTCCTGCTGGTCGACTTCCAAGATACAAGGAAGTGATACTACTGAATGATCTGATTGACTGTGCTCGACCCGGGGAAGAGATTGAGGTCACAGGTATTTATACAAATAACTTTGACTTATCCTTAAACACAAAGAATGGATTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATCATGTTACGAAGAAGCAAGATCTGTTCTCTTCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATCGGAGAAAGGATTATTAAGTCTATTGCTCCATCAATCTATGGTCATGAGGACATAAAAACTGCAATAGCGTTAGCTATGTTCGGAGGTCAAGAGAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTCAAGTATGTGGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGACCCAGTCACTAGGGAGTGGACCCTTGAGGGTGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTCATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTAAGTATCCATGAAGCCATGGAACAGCAGAGCATAAGCATATCAAAAGCAGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCAAATCCTATCGGAGGAAGATATGATTCCTCAAAAACTTTTTCCTCAAATGTTGAATTGACAGACCCTATTATATCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTGGTTGATCCGGTTACTGATGAAATGCTTGCAAAGTTTGTAGTCGACAGTCACTTCAAGTCACAACCCAAGGGGGCTATTAAAGATGATAAGTCCTTGAGTGAGTCCCAAGATGTTTATGCATCTGCCATGCCAGCTGATCCCGAGATACTTCCTCAAGACCTACTGAAGAAGTACATTACATATGCGAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATTTGGATAAACTGACACATGTATATGCTGAACTGCGGAGGGAATCTTCACACGGGCAAGGAGTCCCCATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGGGTTCTACTTGATTCATTCATTTCAACTCAAAAGTTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTCCTTTATCTTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTTGAAGAAATTGTCACCGGATCTGCTTCAGGTCTTTCGCATGTAGATGTCAAAATAGATGATCTCTACAACAAGGCTCAAGAGCATGAAATATATGATTTGAAACCCTTCTTCAGTAGCAGCCACTTTTCTAGGGCCAATTTTGTATTGGATGAAGAACGAGGAGTGATCAGACATCACCTTGCTAGATGA | 2487 | 0.4298 | MEEADQYESVGLDDSLEDDRDFDQIMEDRRAAEVELDNRDGRVSNRNKLPQLLHDQDTDDDSYRPSKRSRADFRPPVPSDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRYEDEYDDGGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGQFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKVQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANHVTKKQDLFSSYKLTQEDKEEIENLGKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSSNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGAIKDDKSLSESQDVYASAMPADPEILPQDLLKKYITYAKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLSHVDVKIDDLYNKAQEHEIYDLKPFFSSSHFSRANFVLDEERGVIRHHLAR | 828 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi133g00004 | 828 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 131 | 768 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | ProSitePatterns | MCM family signature. | 501 | 509 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Sebi133g00004 | 828 | FunFam | DNA helicase | 372 | 745 | - | - | |
| Sebi133g00004 | 828 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
| Sebi133g00004 | 828 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 572 | 580 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 493 | 507 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 521 | 534 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 545 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 433 | 448 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 222 | 239 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 280 | 294 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 341 | 352 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 245 | 257 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi133g00004 | 828 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 356 | 367 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi133g00004 | 828 | Pfam | MCM P-loop domain | 380 | 602 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 402 | 725 | IPR027417 | - | |
| Sebi133g00004 | 828 | Pfam | MCM N-terminal domain | 146 | 216 | IPR027925 | - | |
| Sebi133g00004 | 828 | ProSiteProfiles | MCM family domain profile. | 392 | 598 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | Gene3D | - | 221 | 338 | IPR012340 | - | |
| Sebi133g00004 | 828 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Sebi133g00004 | 828 | Gene3D | - | 372 | 745 | IPR027417 | - | |
| Sebi133g00004 | 828 | FunFam | DNA helicase | 240 | 290 | - | - | |
| Sebi133g00004 | 828 | SMART | mcm | 215 | 723 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi133g00004 | 828 | MobiDBLite | consensus disorder prediction | 52 | 79 | - | - | |
| Sebi133g00004 | 828 | Gene3D | - | 240 | 290 | - | - | |
| Sebi133g00004 | 828 | Gene3D | - | 138 | 220 | - | - | |
| Sebi133g00004 | 828 | Pfam | MCM OB domain | 220 | 339 | IPR033762 | - | |
| Sebi133g00004 | 828 | SUPERFAMILY | Nucleic acid-binding proteins | 147 | 361 | IPR012340 | - | |
| Sebi133g00004 | 828 | CDD | MCM2 | 395 | 721 | - | - | |
| Sebi133g00004 | 828 | Pfam | MCM AAA-lid domain | 638 | 722 | IPR041562 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi133g00004 | Sebi-Chr133 | 60332 | 64974 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi133g00004 | 1 | 823 | Core DNA Replication Machinery Family | AT1G44900 | 75.553 | 0.0 | 1269 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi133g00004 | K02540 | - | gmx:100799441 | 1481.46 |