Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00123 ATGGCGGTTGCTGAGAATGTTGGGGCAAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCATCGGACTCAAGTGAGGTTGAGAAATCGAAAACCAGAAGCGATCAGAATCTGAATAACGGTGTGTTCAACCATCAACACCAAGATAGAGTTCCGAGTAATTTATCAGTTCCTAATGGTAATTACAACTACAAGGCTCAAGTGGGTCAGATGAACACAAATGGGGTCCAAAACCAACAGTTGGTGCTGAACAATGATGGATATGAGATTGATGGGATCAGAACCGGGGAGAATGGAAGTGAGGGTTTTAAGGGTGATATGAGGGAATTGGAAGAACTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCCCCCTCACTAACAAATAATCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATACTTCACAATAATTATGGCAATGCTAATGGACAGACTAACAGAAGGAGGAAGAATGGCTATGCTTCTGGGAAGCGTAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCAGAGGACTGTTTATGTGTCTGATATTGATCAACTGGTTACTGAAGAGCAGTTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTGTGTGGGGATCCCAATTCTATTCTTCGGTTCGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTCTGAACCTGTCTGGAACGATGCTTGGATACTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTGAAAAACTTCTTTGAATCTATCTGTGGCGAGGTTCAACGGTTGAGGCTTCTTGGTGATTACCATCATTCAACTCGAATTGCTTTTGTTGAATTCAAAATGGCTGAGAGTGCAATTGCAGCCCTGAGCTGTAGTGGTGTGATTTTGGGTACACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGTTCCCGTGCTCCTCGCACTGCTATGCACTGA 1143 0.4304 MAVAENVGAKIGSSSQNLDNSVVSSDSSEVEKSKTRSDQNLNNGVFNHQHQDRVPSNLSVPNGNYNYKAQVGQMNTNGVQNQQLVLNNDGYEIDGIRTGENGSEGFKGDMRELEELLSKLNPMAEEFVPPSLTNNHGYLAGPNAGFGYTNNFILHNNYGNANGQTNRRRKNGYASGKRRVNHKMDMEKREEMIQRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQADVKNFFESICGEVQRLRLLGDYHHSTRIAFVEFKMAESAIAALSCSGVILGTLPIRVSPSKTPVRSRAPRTAMH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00123 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 260 IPR000504 GO:0003723
Sebi132g00123 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 357 IPR000504 GO:0003723
Sebi132g00123 380 Gene3D - 277 375 IPR012677 -
Sebi132g00123 380 Gene3D - 155 272 IPR012677 -
Sebi132g00123 380 SMART rrm1_1 293 364 IPR000504 GO:0003723
Sebi132g00123 380 SMART rrm1_1 196 266 IPR000504 GO:0003723
Sebi132g00123 380 MobiDBLite consensus disorder prediction 9 28 - -
Sebi132g00123 380 Pfam Ataxin-2 C-terminal region 117 131 IPR009818 -
Sebi132g00123 380 SUPERFAMILY RNA-binding domain, RBD 282 373 IPR035979 GO:0003676
Sebi132g00123 380 MobiDBLite consensus disorder prediction 1 61 - -
Sebi132g00123 380 CDD RRM2_CID8_like 288 369 IPR034825 -
Sebi132g00123 380 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 115 373 - -
Sebi132g00123 380 FunFam Polyadenylate-binding protein-interacting protein 11 158 272 - -
Sebi132g00123 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 270 IPR000504 GO:0003723
Sebi132g00123 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
Sebi132g00123 380 MobiDBLite consensus disorder prediction 37 61 - -
Sebi132g00123 380 CDD RRM1_CID8_like 193 272 IPR034823 -
Sebi132g00123 380 MobiDBLite consensus disorder prediction 159 180 - -
Sebi132g00123 380 FunFam Polyadenylate-binding protein-interacting protein 10 286 364 - -
Sebi132g00123 380 SUPERFAMILY RNA-binding domain, RBD 167 271 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00123 Sebi-Chr132 1716074 1719814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00123 197 356 Eukaryotic Initiation Factors Gene Family AT1G34140 25.610 1.29e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00123 - - gmx:106794116 618.231