Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00107 ATGGAGACTTCTGAACCTAACAAAGATGGTGCTACTAGTGGTAGTGGTAGTGGGGAGAAGCCTGAGAGTGTTCCCTCTGTGGGGTTTGGAGAGCTTTTCAGATTTGCTGATGGGTTAGATTATATTCTCATGTCAATTGGAACGGTTGGAGCAATAGTACACGTATGCATTTTACTTCCTGGTGGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACTGGAGAGCGTCAATCAACCAAGATGAGGATCAAGTATTGGAAGCTGCGTTGAGTCAGGACATTGAGTTCTTTGATACTGAGTTAGGGAATTTCATTCATTACATGGCTACTTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTTTGGCAATTGGCTCTGGTCACACTTGCTGTGGTTCCTATGATAGCTGTGATTGGAGCCATTCACACTACCACGTTGGCTAAGCTCTCTAGTAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAAAACGGTTGTGCAAATCAGAGTAGTGTTTGCCTTTGTTGGGGAGTCACGAGCATTGCAAGCCTATTCATCAGCCTTGAAGGTTGCTCAGAAGATTGGCTACAAAACTGGGCATCATTACACCAATGGAGGACTGCCATTGCAACTATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCTGCACCCAGCATGGCTGCATTTACAAAGGCCAGGGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCTGGGATGACCGAAACAGCCAGAGGTTCAGATTCTAACAATTTCTCCTTGAATGTGCCTGCTGGAAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGATCCAACTTCAGGACAAGTTCTGCTAGATGGTCATGACATTAAAACATTGAAGCTTAGATGGCTGAGGCAGCAGATAGGACTGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCCCATTCCTTCATCATCAAACTTCCAGAAGGCTATGATACCCTGGCAACAAGTGCATTAGACTCAGAATCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTGATTGCCCATCGCCTCTCTACAATTCGCAAAGCTGATCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTTCTAAAGGAGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAAGAGATGGCACATGAAACTGCTATGAATAATGCTAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCACCCATAATTGCTAGAAATTCTTCTTATGGCCGGTCACCATACTCACGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATTACAGACTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGATCTATAGGCTCTATTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTCTATTACAATCCAGACCACAGATACATGATCCGACAAATAGATAAGTACTGCTACTTGTTGATTGGACTTTCATCAACAGCACTTCTTTTCAATACCTTGCAACACTTCTTCTGGGATATAGTTGGGGAAAATCTTACAAAACGTGTGAGGGAGAAAATGCTGACAGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATAGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGTACTGCAGGCTTTGTGTTACAGTGGCGCCTTGCCCTTGTCCTCATAGCTGTTTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACATGGAAGCTGCTCATGCCAAGGCCACACAACTAGCAGGAGAGGCTATAGCCAATGTAAGGACTGTTGCAGCTTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCAGCTCCAATCTTGAAACTCCACTACAAAGATGCTTTTGGAAAGGACAGATTTCAGGAAGTGGATATGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGAATCTCTGACTTCTCTAAAACAATCAGAGTTTTTATGGTCCTCATGGTATCTGCCAATGGTGCTGCTGAAACTTTAACACTTGCTCCTGACTTCATCAAAGGAGGTAGAGCCATGAAGTCAGTCTTTGATCTCCTTGACCGCAGAACTGAAATTGAACCAGATGATCAAGATGCTACTGCTGTTCCAGATCGTCTTAGAGGACCTAGTGGCTGTGGTAAGAGCTCAGTGATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTAGAGTCATGATTGATGGGAAGGACATAAGGAAATACAACCTTAAGTCCTTAAGAAGGCACATTTCTGTGCTGCAACTCTTGCCAATGCTCATAAGTTCATATCTGTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAACTCTCTGGGGGACAAAAGCAGAGAATAGCAGTTGCTAGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGAAATGCCAATGTGATTGCTGTGGTTGATGATGGGAAAGTAGCTGAACAAGGTTCCCATTCACAGTTGTTGAAAAATCACCCAGATGGGATTTATGCACGCATGATTCAATTACAAAGGTTCACACATAGTCAAGTAATTGGAATGGCCTCTGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 3069 0.4366 METSEPNKDGATSGSGSGEKPESVPSVGFGELFRFADGLDYILMSIGTVGAIVHVCILLPGGGCCYMGIFMGRDFLLDVDWRASINQDEDQVLEAALSQDIEFFDTELGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVENGCANQSSVCLCWGVTSIASLFISLEGCSEDWLQNWASLHQWRTAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGMTETARGSDSNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVEIEEAARVANAHSFIIKLPEGYDTLATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHRYMIRQIDKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDMEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFSSNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDQDATAVPDRLRGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVLQLLPMLISSYLLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERNANVIAVVDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00107 1022 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 527 814 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi132g00107 1022 MobiDBLite consensus disorder prediction 1 20 - -
Sebi132g00107 1022 SUPERFAMILY ABC transporter transmembrane region 514 834 IPR036640 GO:0005524|GO:0016020
Sebi132g00107 1022 Gene3D - 360 435 IPR027417 -
Sebi132g00107 1022 Gene3D - 906 957 IPR027417 -
Sebi132g00107 1022 ProSitePatterns ABC transporters family signature. 921 935 IPR017871 GO:0005524|GO:0016887
Sebi132g00107 1022 Gene3D ABC transporter type 1, transmembrane domain 503 837 IPR036640 GO:0005524|GO:0016020
Sebi132g00107 1022 Gene3D ABC transporter type 1, transmembrane domain 217 263 IPR036640 GO:0005524|GO:0016020
Sebi132g00107 1022 Gene3D ABC transporter type 1, transmembrane domain 106 189 IPR036640 GO:0005524|GO:0016020
Sebi132g00107 1022 Gene3D ABC transporter type 1, transmembrane domain 436 447 IPR036640 GO:0005524|GO:0016020
Sebi132g00107 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 434 IPR027417 -
Sebi132g00107 1022 Gene3D - 848 902 IPR027417 -
Sebi132g00107 1022 Gene3D - 273 335 IPR027417 -
Sebi132g00107 1022 Gene3D - 958 1001 IPR027417 -
Sebi132g00107 1022 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 807 992 IPR003439 GO:0005524
Sebi132g00107 1022 SMART AAA_5 842 998 IPR003593 GO:0016887
Sebi132g00107 1022 SMART AAA_5 280 408 IPR003593 GO:0016887
Sebi132g00107 1022 CDD ABC_6TM_Pgp_ABCB1_D2_like 516 832 - -
Sebi132g00107 1022 SUPERFAMILY ABC transporter transmembrane region 51 260 IPR036640 GO:0005524|GO:0016020
Sebi132g00107 1022 MobiDBLite consensus disorder prediction 1 24 - -
Sebi132g00107 1022 FunFam ABC transporter B family member 19 816 838 - -
Sebi132g00107 1022 Pfam ABC transporter 846 895 IPR003439 GO:0005524
Sebi132g00107 1022 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 102 173 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi132g00107 1022 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 247 431 IPR003439 GO:0005524
Sebi132g00107 1022 FunFam ABC transporter B family member 1 506 815 - -
Sebi132g00107 1022 Pfam ABC transporter transmembrane region 104 174 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi132g00107 1022 Pfam ABC transporter transmembrane region 528 797 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi132g00107 1022 Pfam ABC transporter 907 949 IPR003439 GO:0005524
Sebi132g00107 1022 PANTHER ABC TRANSPORTER B FAMILY 906 957 IPR039421 -
Sebi132g00107 1022 Pfam ABC transporter 272 341 IPR003439 GO:0005524
Sebi132g00107 1022 MobiDBLite consensus disorder prediction 1003 1022 - -
Sebi132g00107 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 995 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00107 Sebi-Chr132 1482844 1488649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00107 20 58 Calmodulin-binding Proteins AT2G36910 64.103 2.76e-08 56.2