Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00084 ATGCTGAACCTAACTCTTCCCGGAGCACACCCTGACCCTGACGCTGTTGCCCATGAAGTTCATAGGAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGCTAGCAATGTCACAGAAAGATGAGTCTTCTTCATGTTTCACAGGGAACCCAATTGATGATTGTTGGAAATGTGACCCAGATTGGCCTAACAACCGTCAGAGGTTAGCTGATTGTGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGAAAAGGTGGTGAATTTTATGTTGTTACTGATTCTTCAGATAATGATGCTGTGAATCCCAAACCTGGAACTCTGAGATATGCAGTGATACAAAATGAGCCACTGTGGATAGTGTTTCCAAGTAACATGATGATTAAGCTGTCTCAGGAGCTGATCTTTAACAGCTACAAGACCATTGATGGGCGTGGAGCAGATGTACACATTGTGGGAGGAGGGTGCATCACTCTGCAGTATATAAGCAATGTCATTATACACAATATTCATATCCACCATTGTCATCCCTCAGGTAACACAAACGTGCGGTCAAGTCCAGAGCACTACGGGTACAGAACAGAATCAGACGGTGATGGAATATCCATATTCGGATCCAAAGACATATGGATCGACCATTGCACCCTATCACGTTGCAAGGACGGTTTAATAGACGCTGTGATGGGTTCAACCGCTATAACCATATCCAACAACTTCATGTCACACCACAATGAGGTGATGCTATTGGGACACAGCGACGATTACCTTCCAGACTCAGGCATGCAGGTAACCATCGCTTTCAACCACTTTGGTGAGAAGCTCGTTCAGAGGATGCCACGTTGCAGAAGAGGTTACATTCACGTTGTCAACAACGACTTCACTCAGTGGGAGATGTATGCTATTGGAGGGAGTGGGGAACCCACTATTAACAGCCAGGGGAACCGTTATACTGCACCTACTAACCCTTTTGCTAAGGAAGTGACAAAGAGGGTGGAGACTCAACAGTCCAAGTGGAAGGGATGGAATTGGAGGTCAGAGGGGCACATTATGGTGAATGGAGCATTTTTTGTAACGTCAGGGGAAGGTCTTGAGGTTAAGTATGAGAAGGCTTATAGTATTGAACCTAAGTCTGCTGATCGCATTTCTCTCCTCACCATGTCTGCCGGAGTTCTAGGCAACGCCAGGGACAACAATCTGGGAATGTGGAGCAGAGGACCTAACGGTGATGGTGATGGTTATGACACATATGAGTCTGGGCCAGAGTACACGGATGATATGTCGAGGAGTGCGAGAGTGGTGCTGCCACCTTCACCTGCTTACTCTTGTGTTGCTGTGCTTCTTGTCTTGTAG 1344 0.4643 MLNLTLPGAHPDPDAVAHEVHRKVNASIARREMLAMSQKDESSSCFTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTAITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYTAPTNPFAKEVTKRVETQQSKWKGWNWRSEGHIMVNGAFFVTSGEGLEVKYEKAYSIEPKSADRISLLTMSAGVLGNARDNNLGMWSRGPNGDGDGYDTYESGPEYTDDMSRSARVVLPPSPAYSCVAVLLVL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Sebi132g00084 447 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Sebi132g00084 447 PANTHER PECTATE LYASE 18-RELATED 10 391 IPR045032 GO:0030570
Sebi132g00084 447 FunFam Pectate lyase 48 390 - -
Sebi132g00084 447 Gene3D - 48 390 IPR012334 -
Sebi132g00084 447 Pfam Pectate lyase 132 308 IPR002022 -
Sebi132g00084 447 SUPERFAMILY Pectin lyase-like 44 375 IPR011050 -
Sebi132g00084 447 SMART amb_all 123 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00084 Sebi-Chr132 1234264 1237981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00084 1 425 Polysaccharide Lyase AT3G53190 78.923 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00084 K01728 - gmx:100775595 800.816