Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00082 ATGGACACCAAAATGGAGGAACCTCACGTTGACGGCTCTCCACCAGAAATCGGATATGGCCATTACGGGTTGTCTGTTCCTTGTGTAACACAGAACAAGACGTTCAACAGATGTGCATTCACTGTGGTGTTTGTATGGGGAGATATTTCTGCTCCAAATGCAAGTTCTTCGATGATGATAACAGGAGGTGAAGAGAACTTTTTCCACTGTAACAAATGTGGATGCTGTTATTCATCATTGTTGAAGGATTCACACCACTGTATTGAAAAGGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTTTCTTTTTGATACAACAAAAGACATTACTGTATTGCCATGTGGTCACACCATACATTTGGGATGTGTGAGAGAAATGGAACAGCATTTCCAGTATTCATGCCCTGTTTGCTCAAAGTCTTTCTGTGACATGTCACGCGTGTGGGAGAAACTAGATGAGGAGGTTGCATCAACACCTATGCCTGAAATGTATCAAAATAAGATGGTTTGGATTCTTTGCAATGATTGCGGGGAAACATCTGAAGTAAGTTTTCATTTTGTGGCTCACAAGTGCCTTAAATGCAAGTCCTACAACACAAGAAAGACACAAGCTGCGCCTGCTTCTTGCTCATCGAGAATTGAAGAGATTGTTAGATGA 660 0.4167 MDTKMEEPHVDGSPPEIGYGHYGLSVPCVTQNKTFNRCAFTVVFVWGDISAPNASSSMMITGGEENFFHCNKCGCCYSSLLKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMEQHFQYSCPVCSKSFCDMSRVWEKLDEEVASTPMPEMYQNKMVWILCNDCGETSEVSFHFVAHKCLKCKSYNTRKTQAAPASCSSRIEEIVR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00082 219 ProSiteProfiles Zinc finger CTCHY-type profile. 30 95 IPR017921 -
Sebi132g00082 219 SMART ring_2 96 138 IPR001841 -
Sebi132g00082 219 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 63 205 - -
Sebi132g00082 219 SUPERFAMILY Zinc hairpin stack 61 89 IPR037275 -
Sebi132g00082 219 Pfam Ring finger domain 95 138 IPR001841 -
Sebi132g00082 219 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Sebi132g00082 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 141 IPR013083 -
Sebi132g00082 219 Gene3D - 167 210 - -
Sebi132g00082 219 Pfam Zinc-ribbon 143 201 IPR039512 -
Sebi132g00082 219 SUPERFAMILY RING/U-box 94 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00082 Sebi-Chr132 1210386 1213029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00082 66 212 C2H2 Transcription Factor Family AT3G18290 42.667 8.09e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi132g00082 zinc_ribbon_6 6.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00082 K10144 - rvl:131320978 330.102