Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00055 ATGGATGCCGCCGTCAAGCCGGAATCCGAATCCGCAACGCGGAAAGTTTGCGTGGTTAATGGTTACATTGTTTACACTCGAGCGAAGAGGTCCTTAAATTCGTGTAACGGTTTTTCCGAGGATGGAGAATTCAAGAGATTCAAGTCAAATGCGGAGGTTCCGGTTAAAACGGAGAACGGAGTGGATTGTTGCACGGGAGGAAGAGATGGCGTGTGTGATGAGATGAAGAGCGAGAACAAAGAGGTTGATGAGGTGAGGACGTTCAAGCGGAATACGCGATCGACGTTGAAAGCAAATGTTGTTGAGTCTGGTGGTGAGAAGATAGGGAGTGAGCTAGAACAAGGTGGTGCTCCTGTTGCGAATGGTAAAACTGATGGTGGAACTCGAAGAAGCAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTTAACAGGAAGCCCATGACTGTGAAGGAGCTCTTTGATACAGGTTTACTTGATGGAGTCTCTGTAGTTTACATGGGCGGCATTAAGAAGGATTACGGGGTGTTATTAAGGATGGAGGAATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTCTCCTAGACCAGTGTCATTCTCCAGTCCATCCAGTACTTCCAAGCAATCTGTCTCCTCAAAAATAAAGAGACCTTGGAAGAAAAGAACGAAGGACCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAGTTGCTTGAAGGTTTTAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGTGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCGCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGCATTCCCCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCTATGGCAGCTGGAAGGATTGAAGGAGTTGATCCTATTGAACAGATAACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGGGGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTTAGCAGATCTGGCTTTGGTCCACGCACAATAATAATCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCGGAAGGGAATTGGCTCTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACCTTTTGGTTAAGGGGGCTGAGAGACTTCCTGAGTCTCTCTTGAATGTTATAAAGAAAAAGCAAGAGGAAAAAGGATTAGATCCCATCAACGATGTTGATGTAACATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTCAATCCTATAGTCGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTACGTATTTTTGGCACGGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGGAACCATGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTCTTGGCTTTCTTGAATGTTAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTTAGCAAGGTGAAACCGGACCAGGTATTCCTTGCATTGTATGTCATCTTTATCTTTTCTATCATAATTGTACATTACACCACGACACCTTCCACCACCACTACTTCTACCATTAGTCCTCAAGATAGTAGCACATTTAATTTTCAACTTGGTATATTTAGCAAGATTATAAAGCTTAGTGGTGCACAAGACTTTGTGTCTTTGCTAACAAGTATTGCAAGGGGGAGACACCATCACCCCAAGAGGGAAAAGGACAAATGTGACAATGCCAAATGGGCTTCCAAGCTAATTTCAGACTACAATGTGGCTCTTGTTTTCACAGTTGACTTAAAGGGCTGTGGTAACTTCAGTAGTGTGCAGAAAGCAGTTGATGCTGTCCCTGAATCTACCTCTGATACCACCCTTATCATAATTGACTCTGGTACTTACAGGGAAAAGGTAGTGGTTCAGGCCAACAAAACAAACTTGATACTTCAGGGTCAAGGGTATCTTAATACAATCATAGAATGGAATGACACTGCAAATTCCACTGGTGGAACTTCCTATAGTTACTCATTTGCCGTATTTGCTTCTAAGTTCACTGCTTACAACATTAGCTTTAAGAACACTGCCCCTCCACCATCACCAGGAGAAGTTGGTGCACAGGCAGTGGCATTGAGAGTGACAGGTGATCAAGTTGCATTCTATGGATGTGGGTTTTATGGAGCACAGGACACACTCAATGATGACAGTGGGAGACATTACTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCAAAAGAAGATAGAAATGATTTAGGGGTTAGCGGGTCGATCACAGCACAAGGGCGGCAATCAATGAAGGAGGAAACAGGGTTTTCATTTGTGAATTGTAGCATTGTTGGGAGTGGGAAAGTGTGGCTTGGAAGAGCATGGGGAGCCTCTGCCACTGTGGTCTTCTCAAAAACTTATATGTCTGATGTTGTTGCTGCTGAAGGATGGAACGATTGGAGAGACCCCTCTAGAGACCAGTATCTATCTCTAACTCCTTCTATCATTTTTATATATATCTCTTATTCCTATGTTCTATGGTAA 3033 0.4339 MDAAVKPESESATRKVCVVNGYIVYTRAKRSLNSCNGFSEDGEFKRFKSNAEVPVKTENGVDCCTGGRDGVCDEMKSENKEVDEVRTFKRNTRSTLKANVVESGGEKIGSELEQGGAPVANGKTDGGTRRSKLELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKDYGVLLRMEEYCARAVCAMDAGSPRPVSFSSPSSTSKQSVSSKIKRPWKKRTKDQRLHKLVFEEDGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTVVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAHNANAMAAGRIEGVDPIEQITNRCIRIVKDIEGELSGCALCRGVDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLNVIKKKQEEKGLDPINDVDVTWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKVKPDQVFLALYVIFIFSIIIVHYTTTPSTTTTSTISPQDSSTFNFQLGIFSKIIKLSGAQDFVSLLTSIARGRHHHPKREKDKCDNAKWASKLISDYNVALVFTVDLKGCGNFSSVQKAVDAVPESTSDTTLIIIDSGTYREKVVVQANKTNLILQGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNAKEDRNDLGVSGSITAQGRQSMKEETGFSFVNCSIVGSGKVWLGRAWGASATVVFSKTYMSDVVAAEGWNDWRDPSRDQYLSLTPSIIFIYISYSYVLW 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00055 1010 PANTHER AUTOIMMUNE REGULATOR 201 655 - -
Sebi132g00055 1010 ProSiteProfiles Zinc finger PHD-type profile. 321 366 IPR019787 -
Sebi132g00055 1010 ProSitePatterns Zinc finger PHD-type signature. 324 363 IPR019786 -
Sebi132g00055 1010 MobiDBLite consensus disorder prediction 198 214 - -
Sebi132g00055 1010 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 408 470 - -
Sebi132g00055 1010 MobiDBLite consensus disorder prediction 195 220 - -
Sebi132g00055 1010 Pfam Pectinesterase 755 985 IPR000070 GO:0030599|GO:0042545
Sebi132g00055 1010 Pfam Tify domain binding domain 261 307 IPR032308 -
Sebi132g00055 1010 SMART PHD_3 411 468 IPR001965 -
Sebi132g00055 1010 SMART PHD_3 323 364 IPR001965 -
Sebi132g00055 1010 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 567 653 IPR016181 -
Sebi132g00055 1010 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 310 387 - -
Sebi132g00055 1010 CDD PHD1_AIRE 323 363 - -
Sebi132g00055 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 470 IPR013083 -
Sebi132g00055 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 398 IPR013083 -
Sebi132g00055 1010 SUPERFAMILY Pectin lyase-like 749 987 IPR011050 -
Sebi132g00055 1010 Gene3D - 747 996 IPR012334 -
Sebi132g00055 1010 MobiDBLite consensus disorder prediction 109 129 - -
Sebi132g00055 1010 SUPERFAMILY FYVE/PHD zinc finger 310 368 IPR011011 -
Sebi132g00055 1010 ProSitePatterns Pectinesterase signature 2. 901 910 IPR033131 -
Sebi132g00055 1010 Pfam PHD-finger 324 365 IPR019787 -
Sebi132g00055 1010 SUPERFAMILY FYVE/PHD zinc finger 404 465 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00055 Sebi-Chr132 937988 953394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00055 218 669 PHD Transcription Factor Family AT2G36720 60.841 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi132g00055 Pectinesterase 6.3e-51 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00055 - - gmx:100802562 859.751